* installing *source* package ‘cmenet’ ...
** this is package ‘cmenet’ version ‘0.1.2’
** package ‘cmenet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++11
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cme.cpp -o cme.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getModelMtx.cpp -o getModelMtx.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
In file included from cme.cpp:2:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
66 | In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29 #p:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
66 | ragm a mess #pragmaage("Using f meallssaback compilage(tion with"Using Armadillo 14.6.3. Please consider defining -DARMA_U fallback compilation with ASE_CURRENT and also removrmadilloing C++11 14.6.3. Pcolease compilation directive. See GitHub issue #475 for more.nsider defining -DARMA_USE_CURRENT and ")
| ^
also removing C++11 compilation directive. See GitHub issue #475 for more.")
| ^
cme.cpp:307:11: warning: unused variable 'condind' [-Wunused-variable]
307 | int condind = 0; //index for condition
| ^~~~~~~
cme.cpp:653:13: warning: variable 'num_act' set but not used [-Wunused-but-set-variable]
653 | int num_act = 0;
| ^
cme.cpp:522:10: warning: unused variable 'cur_beta' [-Wunused-variable]
522 | double cur_beta = 0.0; //running beta
| ^~~~~~~~
cme.cpp:529:8: warning: unused variable 'kkt_bool' [-Wunused-variable]
529 | bool kkt_bool;
| ^~~~~~~~
cme.cpp:557:10: warning: unused variable 'inprod' [-Wunused-variable]
557 | double inprod = 0.0; //inner product
| ^~~~~~
cme.cpp:558:10: warning: unused variable 'thresh' [-Wunused-variable]
558 | double thresh = 0.0; //threshold for screening
| ^~~~~~
cme.cpp:559:7: warning: variable 'num_act' set but not used [-Wunused-but-set-variable]
559 | int num_act = 0;
| ^
1 warning generated.
8 warnings generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o cmenet.so RcppExports.o cme.o getModelMtx.o init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/cmenet.Rcheck/00LOCK-cmenet/00new/cmenet/libs
** generating debug symbols (dSYM)
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cmenet)