Check results for 'clue'

using R Under development (unstable) (2026-02-16 r89426)
using platform: aarch64-apple-darwin23
R was compiled by Apple clang version 17.0.0 (clang-1700.3.19.1) GNU Fortran (GCC) 14.2.0
running under: macOS Sequoia 15.7.1
using session charset: UTF-8 * current time: 2026-02-18 10:37:35 UTC
checking for file ‘clue/DESCRIPTION’ ... OK
this is package ‘clue’ version ‘0.3-67’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘clue’ can be installed ... [3s/6s] OK See the install log for details.
used C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
used SDK: ‘MacOSX14.5.sdk’
checking installed package size ... OK
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [3s/3s] OK
checking Rd files ... [0s/0s] WARNING GVME.Rd:21: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection GVME_Consensus.Rd:6: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection Kinship82.Rd:14: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection Kinship82_Consensus.Rd:6: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection Phonemes.Rd:14: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection addtree.Rd:30: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_agreement.Rd:45: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_bag.Rd:26: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_consensus.Rd:46: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_dissimilarity.Rd:43: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_fuzziness.Rd:46: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_medoid.Rd:24: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_pam.Rd:20: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_pclust.Rd:59: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection cl_validity.Rd:40: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection kmedoids.Rd:35: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection l1_fit_ultrametric.Rd:35: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection lattice.Rd:81: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection ls_fit_addtree.Rd:45: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection ls_fit_sum_of_ultrametrics.Rd:34: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection ls_fit_ultrametric.Rd:36: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection pclust.Rd:90: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection solve_LSAP.Rd:36: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection sumt.Rd:75: processing build-stage \Sexpr code failed: Error in gzfile(file, "rb"): cannot open the connection problems found in ‘GVME.Rd’, ‘GVME_Consensus.Rd’, ‘Kinship82.Rd’, ‘Kinship82_Consensus.Rd’, ‘Phonemes.Rd’, ‘addtree.Rd’, ‘cl_agreement.Rd’, ‘cl_bag.Rd’, ‘cl_consensus.Rd’, ‘cl_dissimilarity.Rd’, ‘cl_fuzziness.Rd’, ‘cl_medoid.Rd’, ‘cl_pam.Rd’, ‘cl_pclust.Rd’, ‘cl_validity.Rd’, ‘kmedoids.Rd’, ‘l1_fit_ultrametric.Rd’, ‘lattice.Rd’, ‘ls_fit_addtree.Rd’, ‘ls_fit_sum_of_ultrametrics.Rd’, ‘ls_fit_ultrametric.Rd’, ‘pclust.Rd’, ‘solve_LSAP.Rd’, ‘sumt.Rd’
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [2s/2s] OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [8s/14s] OK
checking PDF version of manual ... [3s/3s] OK
DONE Status: 1 WARNING
using check arguments '--no-clean-on-error '