* installing *source* package ‘bgms’ ... ** this is package ‘bgms’ version ‘0.1.6.3’ ** package ‘bgms’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++20 using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++20 using SDK: ‘MacOSX14.5.sdk’ clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgm/bgm_helper.cpp -o bgm/bgm_helper.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgm/bgm_logp_and_grad.cpp -o bgm/bgm_logp_and_grad.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgm/bgm_sampler.cpp -o bgm/bgm_sampler.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgmCompare/bgmCompare_helper.cpp -o bgmCompare/bgmCompare_helper.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgmCompare/bgmCompare_logp_and_grad.cpp -o bgmCompare/bgmCompare_logp_and_grad.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgmCompare/bgmCompare_sampler.cpp -o bgmCompare/bgmCompare_sampler.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgmCompare_interface.cpp -o bgmCompare_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bgm_interface.cpp -o bgm_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c math/custom_exp.cpp -o math/custom_exp.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c math/e_exp.cpp -o math/e_exp.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/mcmc_hmc.cpp -o mcmc/mcmc_hmc.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/mcmc_leapfrog.cpp -o mcmc/mcmc_leapfrog.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/mcmc_nuts.cpp -o mcmc/mcmc_nuts.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/mcmc_rwm.cpp -o mcmc/mcmc_rwm.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc/mcmc_utils.cpp -o mcmc/mcmc_utils.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrf_prediction.cpp -o mrf_prediction.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mrf_simulation.cpp -o mrf_simulation.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c priors/sbm_edge_prior.cpp -o priors/sbm_edge_prior.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sbm_edge_prior_interface.cpp -o sbm_edge_prior_interface.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/dqrng/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils/progress_manager.cpp -o utils/progress_manager.o clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bgms.so RcppExports.o bgm/bgm_helper.o bgm/bgm_logp_and_grad.o bgm/bgm_sampler.o bgmCompare/bgmCompare_helper.o bgmCompare/bgmCompare_logp_and_grad.o bgmCompare/bgmCompare_sampler.o bgmCompare_interface.o bgm_interface.o math/custom_exp.o math/e_exp.o mcmc/mcmc_hmc.o mcmc/mcmc_leapfrog.o mcmc/mcmc_nuts.o mcmc/mcmc_rwm.o mcmc/mcmc_utils.o mrf_prediction.o mrf_simulation.o priors/sbm_edge_prior.o sbm_edge_prior_interface.o utils/progress_manager.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -L/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/bgms.Rcheck/00LOCK-bgms/00new/bgms/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgms)