• using R version 4.5.0 beta (2025-03-29 r88069)
  • using platform: aarch64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
  • running under: macOS Ventura 13.4
  • using session charset: UTF-8
  • checking for file ‘bbmle/DESCRIPTION’ ... OK
  • this is package ‘bbmle’ version ‘1.0.25.1’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘bbmle’ can be installed ... [5s/6s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/1s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the package can be unloaded cleanly ... [1s/1s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
  • checking loading without being on the library search path ... [1s/1s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [4s/5s] OK
  • checking Rd files ... [0s/0s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [2s/4s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [46s/64s] NOTE   Running ‘BIC.R’ [1s/1s]   Comparing ‘BIC.Rout’ to ‘BIC.Rout.save’ ... OK   Running ‘ICtab.R’ [1s/1s]   Comparing ‘ICtab.Rout’ to ‘ICtab.Rout.save’ ... OK   Running ‘RUnit-tests.R’ [0s/0s]   Running ‘binomtest1.R’ [1s/2s]   Comparing ‘binomtest1.Rout’ to ‘binomtest1.Rout.save’ ... OK   Running ‘boundstest.R’ [0s/0s]   Running ‘controleval.R’ [1s/1s]   Comparing ‘controleval.Rout’ to ‘controleval.Rout.save’ ... OK   Running ‘eval.R’ [1s/1s]   Comparing ‘eval.Rout’ to ‘eval.Rout.save’ ... OK   Running ‘formulatest.R’ [1s/2s]   Comparing ‘formulatest.Rout’ to ‘formulatest.Rout.save’ ... OK   Running ‘glmcomp.R’ [1s/2s]   Comparing ‘glmcomp.Rout’ to ‘glmcomp.Rout.save’ ... OK   Running ‘gradient_vecpar_profile.R’ [6s/9s]   Comparing ‘gradient_vecpar_profile.Rout’ to ‘gradient_vecpar_profile.Rout.save’ ... OK   Running ‘grtest1.R’ [1s/2s]   Comparing ‘grtest1.Rout’ to ‘grtest1.Rout.save’ ... OK   Running ‘impsamp.R’ [1s/2s]   Running ‘methods.R’ [1s/2s]   Comparing ‘methods.Rout’ to ‘methods.Rout.save’ ... OK   Running ‘mortanal.R’ [1s/2s]   Comparing ‘mortanal.Rout’ to ‘mortanal.Rout.save’ ... OK   Running ‘optimize.R’ [1s/2s]   Comparing ‘optimize.Rout’ to ‘optimize.Rout.save’ ... OK   Running ‘optimizers.R’ [1s/2s]   Comparing ‘optimizers.Rout’ to ‘optimizers.Rout.save’ ... OK   Running ‘optimx.R’ [4s/6s]   Comparing ‘optimx.Rout’ to ‘optimx.Rout.save’ ... OK   Running ‘order.R’ [1s/1s]   Comparing ‘order.Rout’ to ‘order.Rout.save’ ... OK   Running ‘parscale.R’ [1s/1s]   Comparing ‘parscale.Rout’ to ‘parscale.Rout.save’ ... OK   Running ‘predict.R’ [1s/1s]   Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ... OK   Running ‘prof_newmin.R’ [1s/1s]   Running ‘prof_spec.R’ [1s/1s]   Running ‘profbound.R’ [1s/1s]   Comparing ‘profbound.Rout’ to ‘profbound.Rout.save’ ...36,38d35 < Warning message: < In mle2(minuslogl = function (a = NULL, b = NULL) : < convergence failure: code=52 (ERROR: ABNORMAL_TERMINATION_IN_LNSRCH)   Running ‘richards.R’ [5s/6s]   Comparing ‘richards.Rout’ to ‘richards.Rout.save’ ... OK   Running ‘startvals.R’ [1s/1s]   Comparing ‘startvals.Rout’ to ‘startvals.Rout.save’ ... OK   Running ‘startvals2.R’ [1s/1s]   Comparing ‘startvals2.Rout’ to ‘startvals2.Rout.save’ ... OK   Running ‘test-relist1.R’ [1s/1s]   Comparing ‘test-relist1.Rout’ to ‘test-relist1.Rout.save’ ... OK   Running ‘testbounds.R’ [1s/1s]   Comparing ‘testbounds.Rout’ to ‘testbounds.Rout.save’ ... OK   Running ‘testderiv.R’ [1s/1s]   Comparing ‘testderiv.Rout’ to ‘testderiv.Rout.save’ ... OK   Running ‘testenv.R’ [1s/1s]   Comparing ‘testenv.Rout’ to ‘testenv.Rout.save’ ... OK   Running ‘testparpred.R’ [1s/2s]   Comparing ‘testparpred.Rout’ to ‘testparpred.Rout.save’ ... OK   Running ‘tmptest.R’ [1s/1s]   Comparing ‘tmptest.Rout’ to ‘tmptest.Rout.save’ ... OK   Running ‘update.R’ [1s/1s]   Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [21s/36s] OK
  • checking PDF version of manual ... [5s/7s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '