* installing *source* package ‘bayestransmission’ ... ** this is package ‘bayestransmission’ version ‘0.1.0’ ** package ‘bayestransmission’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++17 using SDK: ‘MacOSX14.5.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CodeToEvent.cpp -o CodeToEvent.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_AbxCoding.cpp -o infect/infect_AbxCoding.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_AbxLocationState.cpp -o infect/infect_AbxLocationState.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_AbxPatientState.cpp -o infect/infect_AbxPatientState.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_CountLocationState.cpp -o infect/infect_CountLocationState.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Episode.cpp -o infect/infect_Episode.o In file included from infect/infect_AbxLocationState.cpp:2: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_Episode.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * cIn file included from infect/infect_CountLocationState.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: onst e) conIn file included from stinfect/infect_AbxPatientState.cpp:1: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] ; | 23 | int ^ In file included from infect/infect_AbxCoding.cpp:In file included from ./infect/../util/Object.h./infect/infect.hc:25:oIn file included from CodeToEvent.cpp:1: m:29: ./infect/RawEvent.hIn file included from ./infect/infect.h:141pare (Obje29: ./infect/RawEvent.h:23::23::6: In file included from ./infect/infect.h:29: ./infect/RawEvent.h ::23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int comparenote: chidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')6: t ( warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compa 25 | rc warning: onevirtual int compare(Object O'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int com*bs jt *yec)t const;(Object co pa * const rne | ^ e)sct * const e) const; | ^ (onst e ./infect/../util/Object.hOcon:)s25 :14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') tcbjonst; | ^ 25 | virtu; | a ^./infect/../util/Object.h:25:14: l innote: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') t ./infect/../util/Object.h:25 | virtualecomp 25c:are(Object *y); | ^ 14: note: tint conshidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int tcocompare(Object *y); mpar * cons e(Objt e) c| ^ ect *y); | ^ onst; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 1 warning generated. 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_EpisodeHistory.cpp -o infect/infect_EpisodeHistory.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Event.cpp -o infect/infect_Event.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Facility.cpp -o infect/infect_Facility.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_HistoryLink.cpp -o infect/infect_HistoryLink.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_LocationState.cpp -o infect/infect_LocationState.o In file included from infect/infect_EpisodeHistory.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_Facility.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_HistoryLink.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_Event.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_LocationState.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Model.cpp -o infect/infect_Model.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Patient.cpp -o infect/infect_Patient.o 1 warning generated. 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_PatientState.cpp -o infect/infect_PatientState.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_RawEvent.cpp -o infect/infect_RawEvent.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Sampler.cpp -o infect/infect_Sampler.o In file included from infect/infect_RawEvent.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_Model.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_Patient.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_PatientState.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_Sampler.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_SetLocationState.cpp -o infect/infect_SetLocationState.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_State.cpp -o infect/infect_State.o 1 warning generated. 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_System.cpp -o infect/infect_System.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_SystemEpisodeHistory.cpp -o infect/infect_SystemEpisodeHistory.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_SystemHistory.cpp -o infect/infect_SystemHistory.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_UnitEpisodeHistory.cpp -o infect/infect_UnitEpisodeHistory.o In file included from infect/infect_SetLocationState.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_State.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_SystemEpisodeHistory.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_System.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_SystemHistory.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from infect/infect_UnitEpisodeHistory.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxICP2.cpp -o lognormal/lognormal_LinearAbxICP2.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxICP.cpp -o lognormal/lognormal_LinearAbxICP.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxModel2.cpp -o lognormal/lognormal_LinearAbxModel2.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxModel.cpp -o lognormal/lognormal_LinearAbxModel.o 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalAbxICP.cpp -o lognormal/lognormal_LogNormalAbxICP.o In file included from lognormal/lognormal_LinearAbxICP2.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_LinearAbxICP2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxICP2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_LinearAbxICP2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxICP2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from lognormal/lognormal_LinearAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_LinearAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 1 warning generated. 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_LinearAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalICP.cpp -o lognormal/lognormal_LogNormalICP.o In file included from lognormal/lognormal_LinearAbxModel2.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_LinearAbxModel2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxModel2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_LinearAbxModel2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxModel2.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from lognormal/lognormal_LinearAbxModel.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_LinearAbxModel.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxModel.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_LinearAbxModel.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LinearAbxModel.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalMassAct.cpp -o lognormal/lognormal_LogNormalMassAct.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalModel.cpp -o lognormal/lognormal_LogNormalModel.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_MixedICP.cpp -o lognormal/lognormal_MixedICP.o In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_MultiUnitAbxICP.cpp -o lognormal/lognormal_MultiUnitAbxICP.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Markov.cpp -o Markov.o In file included from lognormal/lognormal_LogNormalICP.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_LogNormalICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LogNormalICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_LogNormalICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LogNormalICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from In file included from lognormal/lognormal_LogNormalMassAct.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] lognormal/lognormal_LogNormalModel.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h 23 | int cIn file included from lognormal/lognormal_MixedICP.cpp:1: In file included from ompare (Obj:./lognormal/lognormal.h29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]ect const * const e 23 | :) const; 17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:i | ^ 23:6: warning: nt co./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')m'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Ob 25 | virtject const * constual int compa e) cpare (Object const * ore(nscObject *y);tonst e) ; | ^ cons./lognormal/../util/Object.h: | ^ t; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_MixedICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27In file included from In file included from lognormal/lognormal_LogNormalModel.cpp:1: In file included from ./lognormal/lognormal.h:18:lognormal/lognormal_LogNormalMassAct.cpp:1: In file included from : 15: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual v27 | virtual void 27 | set(int virtuoid al void set(int i, int j, si, inedot j, double vubat(int i, int j, double value) | ^ l./lognormal/../modeling/TestParams.h:26lue) | ^ :15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtu./lognormal/../modeling/TestParams.h:26:15: e value) | ^ anote: ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int lhidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) i , double vvoid a26 | viset(lint i, double value) | ^ rtual void set(int i, double ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) ue) | ^ 54 | v./lognormal/../modeling/TestParams.h:54:alue) 15: | ^ virtnote: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | ual void svirtuet(intal i,void ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) double value, int update, double prset(ival, do54 | uble prin); virtualint i, double value, int update, double prival | ^ , double prin); | void set(int i, doublIn file included from lognormal/lognormal_LogNormalMassAct.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: ^ 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] e val 49 | virtuueal dou, int bleupd lIn file included from lognormal/lognormal_MixedICP.cpp:1: In file included from ./lognormal/lognormal.h:ogPro18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]ate, doub(iblenfe prct:iv 49 | v:al, double Histiprin); | ^ oryrIn file included from lognormal/lognormal_LogNormalModel.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] Ltual double logPr49 | virink *coob(infect::HistoryLink *const tual donst huble logProb() const;infect::HistoryLink *consh | ^ t./lognormal/../modeling/TestParams.h:45:17: ) const; | ^ note: ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double l h) constogProb(infect::hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') Histo; | ^ r./lognormal/../modeling/TestParams.h:45:17: note: yLink *h) over 45 | viride;rtual double lhidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') | ^ ogProb 45In file included from lognormal/lognormal_LogNormalMassAct.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:(infect::His57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] toryLink 57 | virtual | vi voirtual*dh) override; | ^ dIn file included from lognormal/lognormal_MixedICP.cpp:1: In file included from ./lognormal/lognormal.houble logPr set(int i, int j, ob(infect:::18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: doublwarning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] e valu57 | virtuae, intl HistoryLink update, double prival, *void sedh) overrit(int i, int j, dde; | ^ ooubIn file included from lognormal/lognormal_LogNormalModel.cpp:1: le prin); | ^ uIn file included from ./lognormal/lognormal.h:18./lognormal/../modeling/TestParams.h:26:15: ble valIn file included from : note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | vueirt, int up./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.hduate, doubl:57:15e prival, double prin); al v: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] | ^ 57./lognormal/../modeling/TestParams.h:26:15: note: | virtuoid set(inal void set(int i, int j, t i, doubhidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, dldouble value, ine value) | ^ tou update, doubleble ./lognormal/../modeling/TestParams.hprival, double prin); | :54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) value) ^ 54 | vi | ^./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual vrtual void set(int i, double value, ioid set(int i,nt update, double pri ./lognormal/../modeling/TestParams.hdouble va:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) val, double prin 54 | virtual void set(int i); | ^ lue) , double value, int update, do | ^ uble priva./lognormal/../modeling/TestParams.h:l, double prin); | ^ 54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_LogNormalMassAct.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15In file included from lognormal/lognormal_MixedICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bo: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virol israte, itual void set(int i, double value) nIn file included from lognormal/lognormal_LogNormalModel.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: t i, doubl'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] e value, int update, | ^ 57 | virtu double prival, double prin); | ^ al void set(bool israte, int ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) i, double value, i 26 | virtual void sent update,t(int i, double va double prival, doublue) | ^ le prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/modeling_Parameters.cpp -o modeling/modeling_Parameters.o 5 warnings generated. 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/modeling_TestParams.cpp -o modeling/modeling_TestParams.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_AbxParams.cpp -o modeling/models_AbxParams.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_ConstrainedSimulator.cpp -o modeling/models_ConstrainedSimulator.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_DummyModel.cpp -o modeling/models_DummyModel.o In file included from modeling/models_AbxParams.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/modeling_Parameters.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/modeling_TestParams.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_AbxParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_AbxParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_AbxParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_AbxParams.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/modeling_Parameters.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/modeling_Parameters.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/modeling_Parameters.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/modeling_Parameters.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/modeling_TestParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/modeling_TestParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/modeling_TestParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/modeling_TestParams.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/models_ConstrainedSimulator.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_ConstrainedSimulator.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_ConstrainedSimulator.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_ConstrainedSimulator.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_ConstrainedSimulator.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/models_DummyModel.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_DummyModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_DummyModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_DummyModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_DummyModel.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_ForwardSimulator.cpp -o modeling/models_ForwardSimulator.o 5 warnings generated. 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_InsituParams.cpp -o modeling/models_InsituParams.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_MassActionICP.cpp -o modeling/models_MassActionICP.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_MassActionModel.cpp -o modeling/models_MassActionModel.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_Options.cpp -o modeling/models_Options.o In file included from modeling/models_Options.cpp:1: In file included from ./modeling/Options.h:4: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_OutColParams.cpp -o modeling/models_OutColParams.o In file included from modeling/models_ForwardSimulator.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_ForwardSimulator.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_ForwardSimulator.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_ForwardSimulator.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_ForwardSimulator.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/models_MassActionICP.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_InsituParams.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *In file included from modeling/models_MassActionICP.cpp:1: In file included from ./modeling/modeling.h:y); | ^ 21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_MassActionICP.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_MassActionICP.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_MassActionICP.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/models_MassActionModel.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_InsituParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_InsituParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_InsituParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_InsituParams.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/models_MassActionModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_MassActionModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_MassActionModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_MassActionModel.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_RandomTestParams.cpp -o modeling/models_RandomTestParams.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_TestParamsAbx.cpp -o modeling/models_TestParamsAbx.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_UnitLinkedModel.cpp -o modeling/models_UnitLinkedModel.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module.cpp -o Module.o In file included from modeling/models_OutColParams.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from modeling/models_OutColParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_OutColParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_OutColParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_OutColParams.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ modeling/models_OutColParams.cpp:41:12: warning: variable 'z' set but not used [-Wunused-but-set-variable] 41 | double z = 0; | ^ modeling/models_OutColParams.cpp:42:12: warning: variable 'n' set but not used [-Wunused-but-set-variable] 42 | double n = 0; | ^ In file included from Module.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-Infect.cpp -o Module-Infect.o 7 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-Infect-System.cpp -o Module-Infect-System.o In file included from modeling/models_TestParamsAbx.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./modeling/../util/Object.h:25:14: note: In file included from modeling/models_RandomTestParams.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 25 | v 23 | int compareirtual int comp (Oare(Objebject const * const ect *y); | ^ ) const; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from In file included from modeling/models_RandomTestParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] modeling/models_TestParamsAbx.cpp: 27 | virtual void set(int i,1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15 int j, double value) | : warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual vo ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | id set(int i, int j, double value virtu) | ^ al void set(int i, doub./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | vile value) | ^ rtual voi./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) d set(int i, doubl 54 | virtual voide value) | ^ set(int i, double ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual value, int update,void set(int i, double value, i double prival, dount update, double prival, doublble prin); | ^e prin); | ^ In file included from modeling/models_TestParamsAbx.cpp:1: In file included from ./modeling/modeling.hIn file included from modeling/models_RandomTestParams.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(inf 49 | virtual doect::HistoryLink *const h)uble logProb(infect::His const; | ^ toryLink ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual doub*const h) consle logProb(infect::Ht; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') istoryLink *h 45 | virtual dou) override; | ble logProb(infect: ^ In file included from modeling/models_RandomTestParams.cpp:1: In file included from :HistoryLink *h) override; | ^ ./modeling/modeling.h:21: In file included from modeling/models_TestParamsAbx.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 57 | virtual void set(int | virtual void set i, int j, double va(int i, int j, double value, intlue, int update update, doubl, double privale prival, doub, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)le prin); | ^ 26 | vir./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | vitual void set(int i, double valrtual void set(int ue) | ^ ./modeling/TestParams.h:54:15i, double value) | : note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virt ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual voual void set(int i, id set(int i, doubldouble value, int upe value, int update, doudate, double prble prival, doival, double prin); | ^ uble prin); | ^ In file included from modeling/models_TestParamsAbx.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: In file included from modeling/models_RandomTestParams.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, :57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual voiint i, double value, intd set(bool isra update, doublte, int i, doue prival, double prin);ble value, int upda | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual te, double privvoid set(int ial, double prin); | ^ , double ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26value) | ^ | virtual void set(int i, double value) | ^ In file included from Module.cpp:4: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double valIn file included from modeling/models_UnitLinkedModel.cpp:1: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ue) | ^ ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] ./lognormal/../modeling/TestParams.h:26: 23 | in15: t cnote: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) ompare (Obj 26 | viectrtual void set(in const * const it e, d) const; ouble | ^ value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) ./modeling/../util/Object.h:25 54 | vi:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') rtual void set(int i, d 25 | virtual int compouble valuaree, (Objecintt * upy);date, | double prival, doubl ^ e prin); | ^ In file included from Module.cpp:4: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from Module.cpp:4: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from Module.cpp:4: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from modeling/models_UnitLinkedModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_UnitLinkedModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from modeling/models_UnitLinkedModel.cpp:1: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from modeling/models_UnitLinkedModel.cpp:1: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from Module-Infect-System.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from Module-Infect.cpp:1: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-lognormal.cpp -o Module-lognormal.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-models.cpp -o Module-models.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-utils.cpp -o Module-utils.o In file included from Module-Infect-System.cpp:4: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double priIn file included from Module-Infect.cpp:4: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: val, double prin); | ^ ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] In file included from Module-Infect-System.cpp:4: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 27 | virtua 49 | virtul void set(intal double logProb(infect::HistoryL i, int j, double value)ink *const h) const; | ^ | ^ ./modeling/TestParams.h:45:./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtu17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual doublal void set(int i, de logProb(infect::HistoryLink *houble value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | ) override; | ^ In file included from Module-Infect-System.cpp:4: In file included from ./wrap.h:9: In file included from virtual void set(int./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] i, double valu 57 | virtual void set(inte, int update, i, int j, doubdouble prival, le value, int update, dodouble prin); | ^ uble prival,In file included from Module-Infect.cpp:4: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] double p 49 | virtual drin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) ouble logProb(infect26 | virtual void::HistoryLink * set(int i, double value)const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtu | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtal double logPrual void set(int i, doubob(infect::HistoryLink *h) override;le value, int update | ^ In file included from Module-Infect.cpp:4: In file included from ./wrap.h:, double prival, dou9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: ble prin); | ^ 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from Module-Infect-System.cpp:4: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from Module-Infect.cpp:4: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from Module-lognormal.cpp:2: In file included from ./lognormal/lognormal.h:17: In file included from ./lognormal/../infect/infect.h:29: ./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from Module-lognormal.cpp:2: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from Module-lognormal.cpp:2: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from Module-lognormal.cpp:2: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:21: ./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from Module-lognormal.cpp:2: In file included from ./lognormal/lognormal.h:18: In file included from ./lognormal/../modeling/modeling.h:23: ./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ In file included from Module-utils.cpp:2: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h:29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const *In file included from Module-models.cpp:2: In file included from ./modeling/modeling.h:16: In file included from ./modeling/../infect/infect.h: const e) const;29: ./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] | ^ 23 | int compare (Object const ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object* const e) const *y); | ^ ; | ^ ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from Module-utils.cpp:2: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from Module-utils.cpp:2: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HisIn file included from Module-models.cpp:2: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:toryLink *const h) cons15t; | ^ : warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] ./modeling/TestParams.h: 27 | virtual void 45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') set(int i, 45 | in vit jrtu, dal double logoubProle b(ivalue) | ^ nfect::Hi./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) storyLink *h) ove 26 | virride; | ^rtual v In file included from Module-utils.cpp:2: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15:oid set(int i, do uble value) | ^ warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | vir./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) tual void set(int i, 54 | virtual voiint j, double value, intd set(int i, doub update, double prival, le value, int update,double prin); | ^ double prival./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26, double prin); | ^ | virtual void set(int i, double In file included from Module-models.cpp:2: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double l 54 | virtual void ogProb(iset(int i, nfect::HistoryLink *const h) const; | double value, int update ^ ./modeling/TestParams.h:45:17:, double prival, note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual doub double prin); le logProb(infect::HistoryLink * | ^ h) override; | ^ In file included from Module-models.cpp:2: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from Module-utils.cpp:2: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double In file included from Module-models.cpp:2: In file included from ./modeling/modeling.h:23value) | ^ : ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Random.cpp -o Random.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RRandom.cpp -o RRandom.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c runMCMC.cpp -o runMCMC.o In file included from runMCMC.cpp:6: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ In file included from runMCMC.cpp:7: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from runMCMC.cpp:7: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from runMCMC.cpp:7: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from runMCMC.cpp:7: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util.cc -o util/util.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_Integer.cpp -o util/util_Integer.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_List.cpp -o util/util_List.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_Object.cpp -o util/util_Object.o 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_Vector.cpp -o util/util_Vector.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wrap.cpp -o wrap.o In file included from wrap.cpp:1: In file included from ./wrap.h:8: In file included from ./infect/infect.h:29: ./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual] 23 | int compare (Object const * const e) const; | ^ ./util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const') 25 | virtual int compare(Object *y); | ^ 5 warnings generated. In file included from wrap.cpp:1: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 27 | virtual void set(int i, int j, double value) | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from wrap.cpp:1: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual] 49 | virtual double logProb(infect::HistoryLink *const h) const; | ^ ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const') 45 | virtual double logProb(infect::HistoryLink *h) override; | ^ In file included from wrap.cpp:1: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:21: ./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual] 57 | virtual void set(int i, int j, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6) 54 | virtual void set(int i, double value, int update, double prival, double prin); | ^ In file included from wrap.cpp:1: In file included from ./wrap.h:9: In file included from ./modeling/modeling.h:23: ./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual] 57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin); | ^ ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6) 26 | virtual void set(int i, double value) | ^ 5 warnings generated. 5 warnings generated. 5 warnings generated. clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bayestransmission.so CodeToEvent.o infect/infect_AbxCoding.o infect/infect_AbxLocationState.o infect/infect_AbxPatientState.o infect/infect_CountLocationState.o infect/infect_Episode.o infect/infect_EpisodeHistory.o infect/infect_Event.o infect/infect_Facility.o infect/infect_HistoryLink.o infect/infect_LocationState.o infect/infect_Model.o infect/infect_Patient.o infect/infect_PatientState.o infect/infect_RawEvent.o infect/infect_Sampler.o infect/infect_SetLocationState.o infect/infect_State.o infect/infect_System.o infect/infect_SystemEpisodeHistory.o infect/infect_SystemHistory.o infect/infect_UnitEpisodeHistory.o lognormal/lognormal_LinearAbxICP2.o lognormal/lognormal_LinearAbxICP.o lognormal/lognormal_LinearAbxModel2.o lognormal/lognormal_LinearAbxModel.o lognormal/lognormal_LogNormalAbxICP.o lognormal/lognormal_LogNormalICP.o lognormal/lognormal_LogNormalMassAct.o lognormal/lognormal_LogNormalModel.o lognormal/lognormal_MixedICP.o lognormal/lognormal_MultiUnitAbxICP.o Markov.o modeling/modeling_Parameters.o modeling/modeling_TestParams.o modeling/models_AbxParams.o modeling/models_ConstrainedSimulator.o modeling/models_DummyModel.o modeling/models_ForwardSimulator.o modeling/models_InsituParams.o modeling/models_MassActionICP.o modeling/models_MassActionModel.o modeling/models_Options.o modeling/models_OutColParams.o modeling/models_RandomTestParams.o modeling/models_TestParamsAbx.o modeling/models_UnitLinkedModel.o Module.o Module-Infect.o Module-Infect-System.o Module-lognormal.o Module-models.o Module-utils.o Random.o RcppExports.o RRandom.o runMCMC.o util/util.o util/util_Integer.o util/util_List.o util/util_Object.o util/util_Vector.o wrap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -lstdc++ -F/Library/Frameworks/R.framework/.. -framework R ld: warning: ignoring duplicate libraries: '-lc++' installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/bayestransmission.Rcheck/00LOCK-bayestransmission/00new/bayestransmission/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bayestransmission)