* installing *source* package ‘bayestransmission’ ...
** this is package ‘bayestransmission’ version ‘0.1.0’
** package ‘bayestransmission’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++17
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CodeToEvent.cpp -o CodeToEvent.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_AbxCoding.cpp -o infect/infect_AbxCoding.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_AbxLocationState.cpp -o infect/infect_AbxLocationState.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_AbxPatientState.cpp -o infect/infect_AbxPatientState.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_CountLocationState.cpp -o infect/infect_CountLocationState.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Episode.cpp -o infect/infect_Episode.o
In file included from infect/infect_AbxLocationState.cpp:2:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_Episode.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * cIn file included from infect/infect_CountLocationState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: onst e) conIn file included from stinfect/infect_AbxPatientState.cpp:1:
warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
;
| 23 | int ^
In file included from infect/infect_AbxCoding.cpp:In file included from ./infect/../util/Object.h./infect/infect.hc:25:oIn file included from CodeToEvent.cpp:1:
m:29:
./infect/RawEvent.hIn file included from ./infect/infect.h:141pare (Obje29:
./infect/RawEvent.h:23::23::6:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h ::23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int comparenote: chidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')6: t
( warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compa 25 | rc warning: onevirtual int compare(Object O'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int com*bs jt *yec)t const;(Object co
pa * const rne | ^
e)sct * const e) const;
| ^
(onst e ./infect/../util/Object.hOcon:)s25 :14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
tcbjonst;
| ^
25 | virtu;
| a ^./infect/../util/Object.h:25:14: l innote:
hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
t ./infect/../util/Object.h:25 | virtualecomp 25c:are(Object *y);
| ^
14: note: tint conshidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int tcocompare(Object *y);
mpar * cons e(Objt e) c| ^
ect *y);
| ^
onst;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
1 warning generated.
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_EpisodeHistory.cpp -o infect/infect_EpisodeHistory.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Event.cpp -o infect/infect_Event.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Facility.cpp -o infect/infect_Facility.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_HistoryLink.cpp -o infect/infect_HistoryLink.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_LocationState.cpp -o infect/infect_LocationState.o
In file included from infect/infect_EpisodeHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_Facility.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_HistoryLink.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_Event.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_LocationState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Model.cpp -o infect/infect_Model.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Patient.cpp -o infect/infect_Patient.o
1 warning generated.
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_PatientState.cpp -o infect/infect_PatientState.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_RawEvent.cpp -o infect/infect_RawEvent.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_Sampler.cpp -o infect/infect_Sampler.o
In file included from infect/infect_RawEvent.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_Model.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_Patient.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_PatientState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_Sampler.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_SetLocationState.cpp -o infect/infect_SetLocationState.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_State.cpp -o infect/infect_State.o
1 warning generated.
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_System.cpp -o infect/infect_System.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_SystemEpisodeHistory.cpp -o infect/infect_SystemEpisodeHistory.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_SystemHistory.cpp -o infect/infect_SystemHistory.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c infect/infect_UnitEpisodeHistory.cpp -o infect/infect_UnitEpisodeHistory.o
In file included from infect/infect_SetLocationState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_State.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_SystemEpisodeHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_System.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_SystemHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from infect/infect_UnitEpisodeHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxICP2.cpp -o lognormal/lognormal_LinearAbxICP2.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxICP.cpp -o lognormal/lognormal_LinearAbxICP.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxModel2.cpp -o lognormal/lognormal_LinearAbxModel2.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LinearAbxModel.cpp -o lognormal/lognormal_LinearAbxModel.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalAbxICP.cpp -o lognormal/lognormal_LogNormalAbxICP.o
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
1 warning generated.
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalICP.cpp -o lognormal/lognormal_LogNormalICP.o
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalMassAct.cpp -o lognormal/lognormal_LogNormalMassAct.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_LogNormalModel.cpp -o lognormal/lognormal_LogNormalModel.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_MixedICP.cpp -o lognormal/lognormal_MixedICP.o
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lognormal/lognormal_MultiUnitAbxICP.cpp -o lognormal/lognormal_MultiUnitAbxICP.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Markov.cpp -o Markov.o
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h 23 | int cIn file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ompare (Obj:./lognormal/lognormal.h29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]ect const * const e
23 | :) const;
17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:i | ^
23:6: warning: nt co./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')m'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Ob 25 | virtject const * constual int compa e) cpare (Object const * ore(nscObject *y);tonst e) ;
| ^
cons./lognormal/../util/Object.h:
| ^
t;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^ 25 | virtual
int compare(Object *y);
| ^
In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27In file included from In file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from :
15: In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual v27 | virtual void 27 | set(int virtuoid al void set(int i, int j, si, inedot j, double vubat(int i, int j, double value)
| ^
l./lognormal/../modeling/TestParams.h:26lue)
| ^
:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtu./lognormal/../modeling/TestParams.h:26:15: e value)
| ^
anote: ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int lhidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
i , double vvoid a26 | viset(lint i, double value)
| ^
rtual void set(int i, double ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
ue)
| ^
54 | v./lognormal/../modeling/TestParams.h:54:alue)
15: | ^
virtnote: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | ual void svirtuet(intal i,void ./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
double value, int update, double prset(ival, do54 | uble prin); virtualint i, double value, int update, double prival
| ^
, double prin);
| void set(int i, doublIn file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: ^
'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
e val 49 | virtuueal dou, int bleupd lIn file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:ogPro18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]ate, doub(iblenfe prct:iv
49 | v:al, double Histiprin);
| ^
oryrIn file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
Ltual double logPr49 | virink *coob(infect::HistoryLink *const tual donst huble logProb() const;infect::HistoryLink *consh
| ^
t./lognormal/../modeling/TestParams.h:45:17: ) const;
| ^
note: ./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double l h) constogProb(infect::hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
Histo;
| ^
r./lognormal/../modeling/TestParams.h:45:17: note: yLink *h) over 45 | viride;rtual double lhidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
| ^
ogProb 45In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:(infect::His57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
toryLink 57 | virtual | vi voirtual*dh) override;
| ^
dIn file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.houble logPr set(int i, int j, ob(infect:::18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: doublwarning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
e valu57 | virtuae, intl HistoryLink update, double prival, *void sedh) overrit(int i, int j, dde;
| ^
ooubIn file included from lognormal/lognormal_LogNormalModel.cpp:1:
le prin);
| ^
uIn file included from ./lognormal/lognormal.h:18./lognormal/../modeling/TestParams.h:26:15:
ble valIn file included from : note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | vueirt, int up./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.hduate, doubl:57:15e prival, double prin);
al v: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
| ^
57./lognormal/../modeling/TestParams.h:26:15: note: | virtuoid set(inal void set(int i, int j, t i, doubhidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, dldouble value, ine value)
| ^
tou update, doubleble ./lognormal/../modeling/TestParams.hprival, double prin);
| :54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
value) ^
54 | vi | ^./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual vrtual void set(int i, double value, ioid set(int i,nt update, double pri ./lognormal/../modeling/TestParams.hdouble va:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
val, double prin 54 | virtual void set(int i);
| ^
lue)
, double value, int update, do | ^
uble priva./lognormal/../modeling/TestParams.h:l, double prin);
| ^
54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bo: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virol israte, itual void set(int i, double value)
nIn file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: t i, doubl'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
e value, int update, | ^
57 | virtu double prival, double prin);
| ^
al void set(bool israte, int ./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
i, double value, i 26 | virtual void sent update,t(int i, double va double prival, doublue)
| ^
le prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/modeling_Parameters.cpp -o modeling/modeling_Parameters.o
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/modeling_TestParams.cpp -o modeling/modeling_TestParams.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_AbxParams.cpp -o modeling/models_AbxParams.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_ConstrainedSimulator.cpp -o modeling/models_ConstrainedSimulator.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_DummyModel.cpp -o modeling/models_DummyModel.o
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_ForwardSimulator.cpp -o modeling/models_ForwardSimulator.o
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_InsituParams.cpp -o modeling/models_InsituParams.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_MassActionICP.cpp -o modeling/models_MassActionICP.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_MassActionModel.cpp -o modeling/models_MassActionModel.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_Options.cpp -o modeling/models_Options.o
In file included from modeling/models_Options.cpp:1:
In file included from ./modeling/Options.h:4:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_OutColParams.cpp -o modeling/models_OutColParams.o
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:y);
| ^
21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_RandomTestParams.cpp -o modeling/models_RandomTestParams.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_TestParamsAbx.cpp -o modeling/models_TestParamsAbx.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modeling/models_UnitLinkedModel.cpp -o modeling/models_UnitLinkedModel.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module.cpp -o Module.o
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
modeling/models_OutColParams.cpp:41:12: warning: variable 'z' set but not used [-Wunused-but-set-variable]
41 | double z = 0;
| ^
modeling/models_OutColParams.cpp:42:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
42 | double n = 0;
| ^
In file included from Module.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-Infect.cpp -o Module-Infect.o
7 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-Infect-System.cpp -o Module-Infect-System.o
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./modeling/../util/Object.h:25:14: note: In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
25 | v 23 | int compareirtual int comp (Oare(Objebject const * const ect *y);
| ^
) const;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
modeling/models_TestParamsAbx.cpp: 27 | virtual void set(int i,1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15 int j, double value)
| : warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual vo ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | id set(int i, int j, double value virtu)
| ^
al void set(int i, doub./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | vile value)
| ^
rtual voi./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
d set(int i, doubl 54 | virtual voide value)
| ^
set(int i, double ./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual value, int update,void set(int i, double value, i double prival, dount update, double prival, doublble prin);
| ^e prin);
| ^
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.hIn file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(inf 49 | virtual doect::HistoryLink *const h)uble logProb(infect::His const;
| ^
toryLink ./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual doub*const h) consle logProb(infect::Ht;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
istoryLink *h 45 | virtual dou) override;
| ble logProb(infect: ^
In file included from modeling/models_RandomTestParams.cpp:1:
In file included from :HistoryLink *h) override;
| ^
./modeling/modeling.h:21:
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 57 | virtual void set(int | virtual void set i, int j, double va(int i, int j, double value, intlue, int update update, doubl, double privale prival, doub, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)le prin);
| ^
26 | vir./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | vitual void set(int i, double valrtual void set(int ue)
| ^
./modeling/TestParams.h:54:15i, double value)
| : note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virt ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual voual void set(int i, id set(int i, doubldouble value, int upe value, int update, doudate, double prble prival, doival, double prin);
| ^
uble prin);
| ^
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, :57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual voiint i, double value, intd set(bool isra update, doublte, int i, doue prival, double prin);ble value, int upda
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual te, double privvoid set(int ial, double prin);
| ^
, double ./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26value)
| ^
| virtual void set(int i, double value)
| ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double valIn file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
ue)
| ^
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
./lognormal/../modeling/TestParams.h:26: 23 | in15: t cnote: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
ompare (Obj 26 | viectrtual void set(in const * const it e, d) const;
ouble | ^
value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
./modeling/../util/Object.h:25 54 | vi:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
rtual void set(int i, d 25 | virtual int compouble valuaree, (Objecintt * upy);date,
| double prival, doubl ^
e prin);
| ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from Module-Infect-System.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from Module-Infect.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-lognormal.cpp -o Module-lognormal.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-models.cpp -o Module-models.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Module-utils.cpp -o Module-utils.o
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double priIn file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
val, double prin);
| ^
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
27 | virtua 49 | virtul void set(intal double logProb(infect::HistoryL i, int j, double value)ink *const h) const;
| ^
| ^
./modeling/TestParams.h:45:./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtu17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual doublal void set(int i, de logProb(infect::HistoryLink *houble value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | ) override;
| ^
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from virtual void set(int./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
i, double valu 57 | virtual void set(inte, int update, i, int j, doubdouble prival, le value, int update, dodouble prin);
| ^
uble prival,In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
double p 49 | virtual drin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
ouble logProb(infect26 | virtual void::HistoryLink * set(int i, double value)const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtu | ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtal double logPrual void set(int i, doubob(infect::HistoryLink *h) override;le value, int update
| ^
In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:, double prival, dou9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: ble prin);
| ^
'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const *In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h: const e) const;29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
| ^
23 | int compare (Object const ./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object* const e) const *y);
| ^
;
| ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HisIn file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:toryLink *const h) cons15t;
| ^
: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
./modeling/TestParams.h: 27 | virtual void 45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
set(int i, 45 | in vit jrtu, dal double logoubProle b(ivalue)
| ^
nfect::Hi./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
storyLink *h) ove 26 | virride;
| ^rtual v
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15:oid set(int i, do uble value)
| ^
warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | vir./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
tual void set(int i, 54 | virtual voiint j, double value, intd set(int i, doub update, double prival, le value, int update,double prin);
| ^
double prival./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26, double prin);
| ^ | virtual void set(int i, double
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double l 54 | virtual void ogProb(iset(int i, nfect::HistoryLink *const h) const;
| double value, int update ^
./modeling/TestParams.h:45:17:, double prival, note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual doub double prin);
le logProb(infect::HistoryLink * | ^
h) override;
| ^
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:23value)
| ^
:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Random.cpp -o Random.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RRandom.cpp -o RRandom.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c runMCMC.cpp -o runMCMC.o
In file included from runMCMC.cpp:6:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util.cc -o util/util.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_Integer.cpp -o util/util_Integer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_List.cpp -o util/util_List.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_Object.cpp -o util/util_Object.o
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c util/util_Vector.cpp -o util/util_Vector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wrap.cpp -o wrap.o
In file included from wrap.cpp:1:
In file included from ./wrap.h:8:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
23 | int compare (Object const * const e) const;
| ^
./util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
25 | virtual int compare(Object *y);
| ^
5 warnings generated.
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
27 | virtual void set(int i, int j, double value)
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
49 | virtual double logProb(infect::HistoryLink *const h) const;
| ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
45 | virtual double logProb(infect::HistoryLink *h) override;
| ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
57 | virtual void set(int i, int j, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
54 | virtual void set(int i, double value, int update, double prival, double prin);
| ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
57 | virtual void set(bool israte, int i, double value, int update, double prival, double prin);
| ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
26 | virtual void set(int i, double value)
| ^
5 warnings generated.
5 warnings generated.
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bayestransmission.so CodeToEvent.o infect/infect_AbxCoding.o infect/infect_AbxLocationState.o infect/infect_AbxPatientState.o infect/infect_CountLocationState.o infect/infect_Episode.o infect/infect_EpisodeHistory.o infect/infect_Event.o infect/infect_Facility.o infect/infect_HistoryLink.o infect/infect_LocationState.o infect/infect_Model.o infect/infect_Patient.o infect/infect_PatientState.o infect/infect_RawEvent.o infect/infect_Sampler.o infect/infect_SetLocationState.o infect/infect_State.o infect/infect_System.o infect/infect_SystemEpisodeHistory.o infect/infect_SystemHistory.o infect/infect_UnitEpisodeHistory.o lognormal/lognormal_LinearAbxICP2.o lognormal/lognormal_LinearAbxICP.o lognormal/lognormal_LinearAbxModel2.o lognormal/lognormal_LinearAbxModel.o lognormal/lognormal_LogNormalAbxICP.o lognormal/lognormal_LogNormalICP.o lognormal/lognormal_LogNormalMassAct.o lognormal/lognormal_LogNormalModel.o lognormal/lognormal_MixedICP.o lognormal/lognormal_MultiUnitAbxICP.o Markov.o modeling/modeling_Parameters.o modeling/modeling_TestParams.o modeling/models_AbxParams.o modeling/models_ConstrainedSimulator.o modeling/models_DummyModel.o modeling/models_ForwardSimulator.o modeling/models_InsituParams.o modeling/models_MassActionICP.o modeling/models_MassActionModel.o modeling/models_Options.o modeling/models_OutColParams.o modeling/models_RandomTestParams.o modeling/models_TestParamsAbx.o modeling/models_UnitLinkedModel.o Module.o Module-Infect.o Module-Infect-System.o Module-lognormal.o Module-models.o Module-utils.o Random.o RcppExports.o RRandom.o runMCMC.o util/util.o util/util_Integer.o util/util_List.o util/util_Object.o util/util_Vector.o wrap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -lstdc++ -F/Library/Frameworks/R.framework/.. -framework R
ld: warning: ignoring duplicate libraries: '-lc++'
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/bayestransmission.Rcheck/00LOCK-bayestransmission/00new/bayestransmission/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayestransmission)