Install log for 'bayescopulareg'

* installing *source* package ‘bayescopulareg’ ...
** this is package ‘bayescopulareg’ version ‘0.1.3’
** package ‘bayescopulareg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++11
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c cdf.cpp -o cdf.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c cholesky.cpp -o cholesky.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c condnormal.cpp -o condnormal.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c copula_predict.cpp -o copula_predict.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c invcdf.cpp -o invcdf.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from condnormal.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compIn file included from cholesky.cpp:2:
In file included from ./bayescopulareg.h:ilation w5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.hith Armadill:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:o 14.6.3. Pl66:ease c17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
ons   66ider defi |  ning -       #DARpragma meMA_ssage("UUSE_CURRENT and also removing C+sing fallback compilat+11 compilationion d wirectiitve.h Arm See GitadHub issue #illo 1In file included from In file included from copula_predict.cpp:1:
In file included from 44.6.3. Pleascdf.cpp./bayescopulareg.h::755In file included from invcdf.cpp: :
1e consider defIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:261o:
:
:
In file included from ./bayescopulareg.h:In file included from In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.hr mor/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.hf:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.hei:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]:5
.:
26"n:
   In file included from )i66 | ng -DA   /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66RMA     #
      :|                 ^
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:2617: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
_pragma me   Ussage("Using faSE_CURllback comRp66 |      i:
latiE  on with  Arm#NTpIn file included from ra dillo a14.6.3. Pagma mes/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.hsa:ndgl also ree("Using fallbaemoving 29ck co:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:ampilsCation +66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]e con+
sider defini11 compng -DARMwith ArmadAiillo 14.6.3. Pleas_   66 |         le consider defining -D#pragma message("Using fallbaUAaRMA_Uction SE_CUk compiladSEtion _RCURREiRNrETwiN andT andetctive. See G  alih stalHAo removinub issue #g C++11 compir47sl5o  ation directive. See GitHurfor more."me)amoving
      | b                 ^
dil issuelo 14.6.C+3. Please consider defining -DA+ #475 for m11 coRMA_USE_Cmpilation directiURREve. Sore.")
      |                 ^
NT and also remoee Gitving C++11 comHub issue #475pilation directive. See GitHub issue #47 for more.5 for more.")
      |                 ^
")
      |                 ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c link_pointer.cpp -o link_pointer.o
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c logPost.cpp -o logPost.o
In file included from link_pointer.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from logPost.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c logPrior.cpp -o logPrior.o
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c loglik_pointer.cpp -o loglik_pointer.o
In file included from logPrior.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from loglik_pointer.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c sample_copula.cpp -o sample_copula.o
In file included from sample_copula.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c update_Gamma.cpp -o update_Gamma.o
In file included from update_Gamma.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c update_Z.cpp -o update_Z.o
In file included from update_Z.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/mvtnorm/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c update_params.cpp -o update_params.o
In file included from update_params.cpp:1:
In file included from ./bayescopulareg.h:5:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o bayescopulareg.so RcppExports.o cdf.o cholesky.o condnormal.o copula_predict.o invcdf.o link_pointer.o logPost.o logPrior.o loglik_pointer.o sample_copula.o update_Gamma.o update_Z.o update_params.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/bayescopulareg.Rcheck/00LOCK-bayescopulareg/00new/bayescopulareg/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayescopulareg)