- using R Under development (unstable) (2026-02-12 r89409)
- using platform: aarch64-apple-darwin23
- R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
- running under: macOS Sequoia 15.7.1
- using session charset: UTF-8
* current time: 2026-02-13 02:08:16 UTC
- checking for file ‘VSURF/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘VSURF’ version ‘1.2.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘VSURF’ can be installed ... [1s/1s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [1s/1s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [3s/3s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [2s/2s] ERROR
Running ‘testthat.R’ [2s/2s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(VSURF)
>
> test_check("VSURF")
Saving _problems/test_orange-35.R
Saving _problems/test_orange-39.R
Saving _problems/test_orange-41.R
Saving _problems/test_orange-55.R
Saving _problems/test_orange-56.R
Saving _problems/test_orange-69.R
Saving _problems/test_orange-70.R
Saving _problems/test_orange-71.R
[ FAIL 8 | WARN 1 | SKIP 0 | PASS 25 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_orange.R:32:5'): Variable importance ─────────────────────────
Expected `orange.vsurf$imp.mean.dec` to equal `c(...)`.
Differences:
9/9 mismatches (average diff: 10.3)
[1] 2956.4 - 2954.5 == 1.96
[2] 201.3 - 216.3 == -14.95
[3] 101.2 - 75.1 == 26.08
[4] 13.9 - 19.9 == -6.06
[5] -13.2 - -24.7 == 11.55
[6] -29.6 - -32.0 == 2.37
[7] -29.9 - -39.0 == 9.13
[8] -36.7 - -40.3 == 3.59
[9] -37.8 - -54.5 == 16.73
── Failure ('test_orange.R:36:5'): Variable importance ─────────────────────────
Expected `orange.vsurf$imp.sd.dec` to equal `c(...)`.
Differences:
9/9 mismatches (average diff: 13.9)
[1] 266.5 - 200.8 == 65.666
[2] 51.2 - 59.5 == -8.212
[3] 98.2 - 65.9 == 32.241
[4] 52.6 - 55.7 == -3.123
[5] 61.6 - 58.0 == 3.610
[6] 46.8 - 44.2 == 2.633
[7] 57.5 - 57.1 == 0.374
[8] 39.1 - 46.9 == -7.797
[9] 41.2 - 42.4 == -1.175
── Failure ('test_orange.R:40:5'): Variable importance ─────────────────────────
Expected `orange.vsurf$imp.mean.dec.ind` to be identical to `c(2L, 1L, 5L, 8L, 7L, 3L, 6L, 9L, 4L)`.
Differences:
4/9 mismatches (average diff: 3.5)
[5] 6 - 7 == -1
[6] 9 - 3 == 6
[7] 7 - 6 == 1
[8] 3 - 9 == -6
── Failure ('test_orange.R:53:5'): OOB erros of nested models ──────────────────
Expected `orange.vsurf$err.interp` to equal `c(723.4782, 447.9998, 779.2947)`.
Differences:
3/3 mismatches (average diff: 2.08)
[1] 723 - 723 == -0.317
[2] 447 - 448 == -1.053
[3] 774 - 779 == -4.860
── Failure ('test_orange.R:56:5'): OOB erros of nested models ──────────────────
Expected `orange.vsurf$err.pred` to equal 721.4986.
Differences:
1/1 mismatches
[1] 721 - 721 == -0.483
── Failure ('test_orange.R:68:5'): Thresholds for the 3 steps ──────────────────
Expected `min(orange.vsurf$pred.pruned.tree)` to equal 42.413.
Differences:
1/1 mismatches
[1] 56 - 42.4 == 13.6
── Failure ('test_orange.R:70:5'): Thresholds for the 3 steps ──────────────────
Expected `orange.vsurf$sd.min` to equal 16.85953.
Differences:
1/1 mismatches
[1] 19 - 16.9 == 2.13
── Failure ('test_orange.R:71:5'): Thresholds for the 3 steps ──────────────────
Expected `orange.vsurf$mean.jump` to equal 331.2949.
Differences:
1/1 mismatches
[1] 327 - 331 == -3.81
[ FAIL 8 | WARN 1 | SKIP 0 | PASS 25 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [3s/3s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '