Install log for 'T4transport'

* installing *source* package ‘T4transport’ ...
** this is package ‘T4transport’ version ‘0.1.8’
** package ‘T4transport’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++20
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++20
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c elementary.cpp -o elementary.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_dist_ipot.cpp -o src_dist_ipot.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_dist_pwdist.cpp -o src_dist_pwdist.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_dist_sinkhorn.cpp -o src_dist_sinkhorn.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_fixed_bary_benamou.cpp -o src_fixed_bary_benamou.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_fixed_bary_sinkhorn.cpp -o src_fixed_bary_sinkhorn.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_free_bary_GradientDescent.cpp -o src_free_bary_GradientDescent.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_free_median_GradientDescent.cpp -o src_free_median_GradientDescent.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_gaussian.cpp -o src_gaussian.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_gromov.cpp -o src_gromov.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c src_routines.cpp -o src_routines.o
src_free_median_GradientDescent.cpp:43:10: warning: unused variable 'NN' [-Wunused-variable]
   43 |   double NN = static_cast<double>(N);
      |          ^~
src_free_median_GradientDescent.cpp:154:10: warning: unused variable 'NN' [-Wunused-variable]
  154 |   double NN = static_cast<double>(N);
      |          ^~
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c utility.cpp -o utility.o
2 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c utility_EMD.cpp -o utility_EMD.o
In file included from utility_EMD.cpp:8:
../inst/include/network_simplex_simple.h:497:14: warning: unused variable 'bs' [-Wunused-variable]
  497 |                                 ArcsType bs = (ArcsType)ceil(_block_size / (double)N);
      |                                          ^~
../inst/include/network_simplex_simple.h:1545:17: note: in instantiation of member function 'lemon::NetworkSimplexSimple<lemon::FullBipartiteDigraph, double>::BlockSearchPivotRule::findEnteringArc' requested here
 1545 |                         while (pivot.findEnteringArc()) {
      |                                      ^
../inst/include/network_simplex_simple.h:1533:11: note: in instantiation of function template specialization 'lemon::NetworkSimplexSimple<lemon::FullBipartiteDigraph, double>::start<lemon::NetworkSimplexSimple<lemon::FullBipartiteDigraph, double>::BlockSearchPivotRule>' requested here
 1533 |                         return start<BlockSearchPivotRule>();
      |                                ^
../inst/include/network_simplex_simple.h:816:11: note: in instantiation of member function 'lemon::NetworkSimplexSimple<lemon::FullBipartiteDigraph, double>::start' requested here
  816 |                         return start();
      |                                ^
utility_EMD.cpp:112:73: note: in instantiation of member function 'lemon::NetworkSimplexSimple<lemon::FullBipartiteDigraph, double>::run' requested here
  112 |   NetworkSimplexSimple<Digraph,double,double>::ProblemType status = net.run();
      |                                                                         ^
1 warning generated.
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o T4transport.so RcppExports.o elementary.o src_dist_ipot.o src_dist_pwdist.o src_dist_sinkhorn.o src_fixed_bary_benamou.o src_fixed_bary_sinkhorn.o src_free_bary_GradientDescent.o src_free_median_GradientDescent.o src_gaussian.o src_gromov.o src_routines.o utility.o utility_EMD.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/T4transport.Rcheck/00LOCK-T4transport/00new/T4transport/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (T4transport)