Check results for 'SeqDetect'

using R Under development (unstable) (2025-11-24 r89059)
using platform: aarch64-apple-darwin23
R was compiled by Apple clang version 17.0.0 (clang-1700.3.19.1) GNU Fortran (GCC) 14.2.0
running under: macOS Sequoia 15.7.1
using session charset: UTF-8
checking for file ‘SeqDetect/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘SeqDetect’ version ‘1.0.7’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘SeqDetect’ can be installed ... [12s/6s] OK See the install log for details.
used C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
used SDK: ‘MacOSX14.5.sdk’
checking C++ specification ... NOTE Specified C++14: please drop specification unless essential
checking installed package size ... INFO installed size is 10.6Mb sub-directories of 1Mb or more: libs 9.3Mb
checking package directory ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/0s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [1s/1s] OK
checking Rd files ... [0s/0s] NOTE checkRd: (-1) process,HybridSequenceClassifier-method.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) process,HybridSequenceClassifier-method.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) process,HybridSequenceClassifier-method.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking line endings in shell scripts ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking compiled code ... OK
checking sizes of PDF files under ‘inst/doc’ ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [1s/1s] OK
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [5s/5s] WARNING Error(s) in re-building vignettes: --- re-building ‘SequentialDetector.Rnw’ using Sweave Loading required package: Rcpp Loading required package: eventdataR Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Warning in as.character.POSIXt(res_test3$stream[i, "timestamp"], format = "%d.%m.%Y. %H:%M:%S") : as.character(td, ..) no longer obeys a 'format' argument; use format(td, ..) ? Generate auto identifiers... Generate auto identifiers... f133c7a486c9136b09432f9b2aef676895e0e0aadd4969c37635bc6713618ecd2a79044c654352db f133c7a486c9136b09432f9b2aef676895e0e0aadd4969c37635bc6713618ecd2a79044c654352db Generate auto identifiers... 69ba6e33da786c4176ae2bbc05c9cea21601c7f7 69ba6e33da786c4176ae2bbc05c9cea21601c7f7 Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Generate auto identifiers... Error: processing vignette 'SequentialDetector.Rnw' failed with diagnostics: Running 'texi2dvi' on 'SequentialDetector.tex' failed. LaTeX errors: ! LaTeX Error: File `filecontents.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.10 \usepackage [a4paper,left=3cm,right=2cm,top=2.5cm,bottom=2.5cm]{geometry... ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘SequentialDetector.Rnw’ SUMMARY: processing the following file failed: ‘SequentialDetector.Rnw’ Error: Vignette re-building failed. Execution halted
checking PDF version of manual ... [1s/2s] OK
DONE Status: 1 WARNING, 2 NOTEs
using check arguments '--no-clean-on-error '