* installing *source* package ‘SFS’ ...
** this is package ‘SFS’ version ‘0.1.4’
** package ‘SFS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++11
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SFSMatrix.cpp -o SFSMatrix.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_sfs.cpp -o rcpp_sfs.o
In file included from SFSMatrix.cpp:26:
In file included from ./SFSMatrix.h:36:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
66 | #pragma message("Using fallback compilation wiIn file included from RcppExports.cpp:4th Arm:
In file included from adi/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
llo 14.6.3. In file included from rcpp_sfs.cpp:66 | #pragma message("Using f24aP:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
lease consid/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:llback compilation wit17:erh Ar warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
ma defining 66 | -d #pragDARMA_USE_Cillo 1ma mU4.6.essaRRENT a3.ge("Us Plend alsing ase coo rnsiemoder defvininifallbacng g C++11-DA coRMAk compi_USE_CURRENT andmpilatlati also removing C++11 compilatioon wn diition directive.rectiveh Ar. See GitHu madillb o 14.6.iSssue #475 for more.ee GitHub issue #475 for more.")
| ^
3. Please ")
| ^
consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
| ^
In file included from SFSMatrix.cpp:26:
./SFSMatrix.h:48:9: warning: 'assert' macro redefined [-Wmacro-redefined]
48 | #define assert(x) sfs_assert_thrower((x),__FILE__, __LINE__)
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/assert.h:56:9: note: previous definition is here
56 | #define assert(e) ((void)0)
| ^
In file included from rcpp_sfs.cpp:26:
./SFSMatrix.h:48:9: warning: 'assert' macro redefined [-Wmacro-redefined]
48 | #define assert(x) sfs_assert_thrower((x),__FILE__, __LINE__)
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/assert.h:56:9: note: previous definition is here
56 | #define assert(e) ((void)0)
| ^
1 warning generated.
2 warnings generated.
2 warnings generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o SFS.so RcppExports.o SFSMatrix.o rcpp_sfs.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/SFS.Rcheck/00LOCK-SFS/00new/SFS/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SFS)