* installing *source* package ‘RcppTskit’ ... ** this is package ‘RcppTskit’ version ‘0.2.0’ ** package ‘RcppTskit’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++20 using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using C++20 using SDK: ‘MacOSX14.5.sdk’ clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/convert.c -o tskit/convert.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/core.c -o tskit/core.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/genotypes.c -o tskit/genotypes.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/haplotype_matching.c -o tskit/haplotype_matching.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/kastore.c -o tskit/kastore.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/stats.c -o tskit/stats.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/tables.c -o tskit/tables.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -falign-functions=64 -Wall -g -O2 -fPIC -c tskit/trees.c -o tskit/trees.o clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -fPIC -falign-functions=64 -Wall -g -O2 -c tests_c.c -o tests_c.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -fPIC -falign-functions=64 -Wall -g -O2 -c RcppTskit.cpp -o RcppTskit.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -fPIC -falign-functions=64 -Wall -g -O2 -c tests.cpp -o tests.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -I/Library/Frameworks/R.framework/Resources/include -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I/opt/R/arm64/include -DNDEBUG -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o RcppTskit.so tskit/convert.o tskit/core.o tskit/genotypes.o tskit/haplotype_matching.o tskit/kastore.o tskit/stats.o tskit/tables.o tskit/trees.o tests_c.o RcppTskit.o tests.o RcppExports.o -Wl,-install_name,@rpath/RcppTskit.so -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/RcppTskit.Rcheck/00LOCK-RcppTskit/00new/RcppTskit/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppTskit)