* installing *source* package ‘RcppPlanc’ ...
** this is package ‘RcppPlanc’ version ‘2.0.3’
** package ‘RcppPlanc’ successfully unpacked and MD5 sums checked
** using staged installation
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
This is libplanc 1.0.0 containing component nmflib 1.0.0
CMake Debug Log at cmake/FindR.cmake:38 (find_program):
find_program called with the following settings:
VAR: R_EXECUTABLE
NAMES: "R"
Documentation: R executable.
Framework
Only Search Frameworks: 0
Search Frameworks Last: 0
Search Frameworks First: 1
AppBundle
Only Search AppBundle: 0
Search AppBundle Last: 0
Search AppBundle First: 0
CMAKE_FIND_USE_CMAKE_PATH: 1
CMAKE_FIND_USE_CMAKE_ENVIRONMENT_PATH: 1
CMAKE_FIND_USE_SYSTEM_ENVIRONMENT_PATH: 1
CMAKE_FIND_USE_CMAKE_SYSTEM_PATH: 1
CMAKE_FIND_USE_INSTALL_PREFIX: 1
find_program considered the following locations:
/opt/R/arm64/bin/bin/R
/opt/R/arm64/bin/R
/opt/gfortran/bin/bin/R
/opt/gfortran/bin/R
/Library/TeX/texbin/bin/R
/Library/TeX/texbin/R
/usr/texbin/bin/R
/usr/texbin/R
/opt/R/arm64/gfortran/bin/bin/R
/opt/R/arm64/gfortran/bin/R
/usr/local/bin/bin/R
The item was found at
/usr/local/bin/R
Call Stack (most recent call first):
CMakeLists.txt:51 (find_package)
CMake Debug Log at cmake/FindR.cmake:59 (find_program):
find_program called with the following settings:
VAR: RSCRIPT_EXECUTABLE
NAMES: "Rscript"
Documentation: Rscript executable.
Framework
Only Search Frameworks: 0
Search Frameworks Last: 0
Search Frameworks First: 1
AppBundle
Only Search AppBundle: 0
Search AppBundle Last: 0
Search AppBundle First: 0
CMAKE_FIND_USE_CMAKE_PATH: 1
CMAKE_FIND_USE_CMAKE_ENVIRONMENT_PATH: 1
CMAKE_FIND_USE_SYSTEM_ENVIRONMENT_PATH: 1
CMAKE_FIND_USE_CMAKE_SYSTEM_PATH: 1
CMAKE_FIND_USE_INSTALL_PREFIX: 1
find_program considered the following locations:
/opt/R/arm64/bin/Rscript
The item was found at
/Library/Frameworks/R.framework/Resources/bin/Rscript
Call Stack (most recent call first):
CMakeLists.txt:51 (find_package)
-- Found R: /usr/local/bin/R (found version "4.5.0")
CMake Debug Log at CMakeLists.txt:51 (find_package):
find_package considered the following paths for FindR.cmake:
/Applications/CMake.app/Contents/share/cmake-3.31/Modules/FindR.cmake
The file was found at
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/cmake/FindR.cmake
-- MKL_THREADING = OMP
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for dgemm_
-- Looking for dgemm_ - found
-- Found BLAS: /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework;-lm;-ldl
-- Could NOT find OpenBLAS (missing: OpenBLAS_DIR)
CMake Warning (dev) at /Applications/CMake.app/Contents/share/cmake-3.31/Modules/FetchContent.cmake:1953 (message):
Calling FetchContent_Populate(HighFive) is deprecated, call
FetchContent_MakeAvailable(HighFive) instead. Policy CMP0169 can be set to
OLD to allow FetchContent_Populate(HighFive) to be called directly for now,
but the ability to call it with declared details will be removed completely
in a future version.
Call Stack (most recent call first):
CMakeLists.txt:147 (FetchContent_Populate)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found HDF5: /opt/R/arm64/lib/libhdf5.a;/opt/R/arm64/lib/libsz.a;/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libz.tbd;/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libdl.tbd;/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libm.tbd (found version "1.14.5")
-- Performing Test HDF5_LINKS
-- Performing Test HDF5_LINKS - Success
-- Found R_Rcpp: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp
-- Found R_RcppArmadillo: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo
-- Found R_RcppProgress: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress
-- Performing Test UNSAFE_MATH
-- Performing Test UNSAFE_MATH - Success
-- Performing Test FINITE_MATH
-- Performing Test FINITE_MATH - Success
-- Performing Test TRAPPING_MATH
-- Performing Test TRAPPING_MATH - Success
-- Performing Test ERRNO_MATH
-- Performing Test ERRNO_MATH - Success
-- Performing Test UNSIGNED_ZERO
-- Performing Test UNSIGNED_ZERO - Success
-- Performing Test RECIPROCAL_MATH
-- Performing Test RECIPROCAL_MATH - Success
-- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC
-- Checking for one of the modules 'hwloc'
-- Looking for HWLOC - found using PkgConfig
-- Found HWLOC: hwloc;m;pthread
-- Performing Test HAVE_HWLOC_PARENT_MEMBER
-- Performing Test HAVE_HWLOC_PARENT_MEMBER - Success
-- Performing Test HAVE_HWLOC_CACHE_ATTR
-- Performing Test HAVE_HWLOC_CACHE_ATTR - Success
-- Performing Test HAVE_HWLOC_OBJ_PU
-- Performing Test HAVE_HWLOC_OBJ_PU - Success
-- Looking for hwloc
-- Looking for hwloc - not found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- NNLS_SOURCE_DIR = /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls
-- NMF_SOURCE_DIR = /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf
-- NMFLIB_COMMON = /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
CMake Warning (dev) at CMakeLists.txt:444 (install):
Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run
"cmake --help-policy CMP0177" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:444 (install):
Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run
"cmake --help-policy CMP0177" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at CMakeLists.txt:444 (install):
Policy CMP0177 is not set: install() DESTINATION paths are normalized. Run
"cmake --help-policy CMP0177" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done (11.0s)
-- Generating done (0.0s)
-- Build files have been written to: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build
/Applications/CMake.app/Contents/bin/cmake -S/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc -B/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build --check-build-system CMakeFiles/Makefile.cmake 0
/Applications/CMake.app/Contents/bin/cmake -E cmake_progress_start /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/CMakeFiles /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/depend
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build && /Applications/CMake.app/Contents/bin/cmake -E cmake_depends "Unix Makefiles" /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/CMakeFiles/utils.dir/DependInfo.cmake "--color="
make -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/build
[ 11%] Building CXX object CMakeFiles/utils.dir/common/utils.cpp.o
/usr/bin/clang++ -DUSING_R -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/_deps/highfive-src/include -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -fvisibility-inlines-hidden -MD -MT CMakeFiles/utils.dir/common/utils.cpp.o -MF CMakeFiles/utils.dir/common/utils.cpp.o.d -o CMakeFiles/utils.dir/common/utils.cpp.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common/utils.cpp
[ 11%] Built target utils
make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build && /Applications/CMake.app/Contents/bin/cmake -E cmake_depends "Unix Makefiles" /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color="
make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build
[ 22%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.o
/usr/bin/clang -DUSING_R -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu99 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT CMakeFiles/hw_detect.dir/common/hw_detect.c.o -MF CMakeFiles/hw_detect.dir/common/hw_detect.c.o.d -o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common/hw_detect.c
[ 22%] Built target hw_detect
make -f CMakeFiles/detect_blas.dir/build.make CMakeFiles/detect_blas.dir/depend
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build && /Applications/CMake.app/Contents/bin/cmake -E cmake_depends "Unix Makefiles" /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/CMakeFiles/detect_blas.dir/DependInfo.cmake "--color="
make -f CMakeFiles/detect_blas.dir/build.make CMakeFiles/detect_blas.dir/build
[ 33%] Building C object CMakeFiles/detect_blas.dir/common/detect_blas.c.o
/usr/bin/clang -DUSING_R -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu99 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT CMakeFiles/detect_blas.dir/common/detect_blas.c.o -MF CMakeFiles/detect_blas.dir/common/detect_blas.c.o.d -o CMakeFiles/detect_blas.dir/common/detect_blas.c.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common/detect_blas.c
[ 33%] Built target detect_blas
make -f nmf/CMakeFiles/nmflib.dir/build.make nmf/CMakeFiles/nmflib.dir/depend
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build && /Applications/CMake.app/Contents/bin/cmake -E cmake_depends "Unix Makefiles" /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf/CMakeFiles/nmflib.dir/DependInfo.cmake "--color="
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[ 44%] Building CXX object nmf/CMakeFiles/nmflib.dir/nmf_lib.cpp.o
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf && /usr/bin/clang++ -DUSING_R -Dnmflib_EXPORTS -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/_deps/highfive-src/include -F/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -fvisibility-inlines-hidden -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT nmf/CMakeFiles/nmflib.dir/nmf_lib.cpp.o -MF CMakeFiles/nmflib.dir/nmf_lib.cpp.o.d -o CMakeFiles/nmflib.dir/nmf_lib.cpp.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp
In file included from /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:4:
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:73:14: warning: 'planc::symmEmbeddedNMFDriver<arma::Mat<double>>::parseParams' hides overloaded virtual function [-Woverloaded-virtual]
void parseParams(const internalSymmParams<T>&pc) {
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: note: in instantiation of template class 'planc::symmEmbeddedNMFDriver<arma::Mat<double>>' requested here
symmEmbeddedNMFDriver nmfRunner(options);
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: note: in instantiation of member function 'planc::nmflib<arma::Mat<double>, double>::symNMF' requested here
X(arma::mat)\
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:8:61: note: expanded from macro 'X'
template planc::nmfOutput<double> planc::nmflib<T, double>::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat<double>&Hinit);
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:16:22: note: hidden overloaded virtual function 'planc::EmbeddedNMFDriver<arma::Mat<double>>::parseParams' declared here: type mismatch at 1st parameter ('const internalParams<arma::Mat<double>> &' vs 'const internalSymmParams<arma::Mat<double>> &')
virtual void parseParams(const internalParams<T>&pc) {
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:73:14: warning: 'planc::symmEmbeddedNMFDriver<arma::SpMat<double>>::parseParams' hides overloaded virtual function [-Woverloaded-virtual]
void parseParams(const internalSymmParams<T>&pc) {
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: note: in instantiation of template class 'planc::symmEmbeddedNMFDriver<arma::SpMat<double>>' requested here
symmEmbeddedNMFDriver nmfRunner(options);
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: note: in instantiation of member function 'planc::nmflib<arma::SpMat<double>, double>::symNMF' requested here
X(arma::sp_mat)\
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:8:61: note: expanded from macro 'X'
template planc::nmfOutput<double> planc::nmflib<T, double>::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat<double>&Hinit);
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:16:22: note: hidden overloaded virtual function 'planc::EmbeddedNMFDriver<arma::SpMat<double>>::parseParams' declared here: type mismatch at 1st parameter ('const internalParams<arma::SpMat<double>> &' vs 'const internalSymmParams<arma::SpMat<double>> &')
virtual void parseParams(const internalParams<T>&pc) {
^
In file included from /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4:
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:135:17: warning: suggest braces around initialization of subobject [-Wmissing-braces]
return {solver.getW(), resolvedH, resolvedV, solver.objErr(), resolvedU};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
{ }
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: note: in instantiation of member function 'planc::nmflib<arma::Mat<double>, double>::uinmf' requested here
X(arma::mat)\
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:19:63: note: expanded from macro 'X'
template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
^
In file included from /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4:
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:135:17: warning: suggest braces around initialization of subobject [-Wmissing-braces]
return {solver.getW(), resolvedH, resolvedV, solver.objErr(), resolvedU};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
{ }
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: note: in instantiation of member function 'planc::nmflib<arma::SpMat<double>, double>::uinmf' requested here
X(arma::sp_mat)\
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:19:63: note: expanded from macro 'X'
template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
^
In file included from /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4:
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:135:17: warning: suggest braces around initialization of subobject [-Wmissing-braces]
return {solver.getW(), resolvedH, resolvedV, solver.objErr(), resolvedU};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
{ }
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: note: in instantiation of member function 'planc::nmflib<planc::H5Mat, double>::uinmf' requested here
X(planc::H5Mat)\
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:19:63: note: expanded from macro 'X'
template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
^
In file included from /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4:
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.inl:135:17: warning: suggest braces around initialization of subobject [-Wmissing-braces]
return {solver.getW(), resolvedH, resolvedV, solver.objErr(), resolvedU};
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
{ }
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: note: in instantiation of member function 'planc::nmflib<planc::H5SpMat, double>::uinmf' requested here
X(planc::H5SpMat)
^
/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/nmf_lib.cpp:19:63: note: expanded from macro 'X'
template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
^
6 warnings generated.
[ 55%] Building CXX object nmf/CMakeFiles/nmflib.dir/bppnmf.cpp.o
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf && /usr/bin/clang++ -DUSING_R -Dnmflib_EXPORTS -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/_deps/highfive-src/include -F/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -fvisibility-inlines-hidden -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT nmf/CMakeFiles/nmflib.dir/bppnmf.cpp.o -MF CMakeFiles/nmflib.dir/bppnmf.cpp.o.d -o CMakeFiles/nmflib.dir/bppnmf.cpp.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nmf/bppnmf.cpp
[ 66%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf && /usr/bin/clang++ -DUSING_R -Dnmflib_EXPORTS -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/_deps/highfive-src/include -F/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -fvisibility-inlines-hidden -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT nmf/CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o -MF CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o.d -o CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls/nnls_lib.cpp
[ 77%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf && /usr/bin/clang++ -DUSING_R -Dnmflib_EXPORTS -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/_deps/highfive-src/include -F/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -fvisibility-inlines-hidden -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT nmf/CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o -MF CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o.d -o CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common/parseutils.cpp
[ 88%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/common/data.cpp.o
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf && /usr/bin/clang++ -DUSING_R -Dnmflib_EXPORTS -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers -I/Library/Frameworks/R.framework/Resources/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include -I/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/nnls -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf -I/Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/_deps/highfive-src/include -F/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -std=gnu++17 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -fPIC -fvisibility-inlines-hidden -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -MD -MT nmf/CMakeFiles/nmflib.dir/__/common/data.cpp.o -MF CMakeFiles/nmflib.dir/__/common/data.cpp.o.d -o CMakeFiles/nmflib.dir/__/common/data.cpp.o -c /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/planc/common/data.cpp
[100%] Linking CXX shared library libnmflib.so
cd /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/nmf && /Applications/CMake.app/Contents/bin/cmake -E cmake_link_script CMakeFiles/nmflib.dir/link.txt --verbose=1
/usr/bin/clang++ -I/opt/R/arm64/include -falign-functions=64 -Wall -g -O2 -arch arm64 -O2 -g -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk -mmacosx-version-min=11 -dynamiclib -Wl,-headerpad_max_install_names -L/opt/R/arm64/lib -o libnmflib.so -install_name @rpath/libnmflib.so CMakeFiles/nmflib.dir/nmf_lib.cpp.o CMakeFiles/nmflib.dir/bppnmf.cpp.o CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o CMakeFiles/nmflib.dir/__/common/data.cpp.o ../CMakeFiles/utils.dir/common/utils.cpp.o ../CMakeFiles/hw_detect.dir/common/hw_detect.c.o ../CMakeFiles/detect_blas.dir/common/detect_blas.c.o -framework Accelerate -lm -ldl /opt/R/arm64/lib/libhwloc.a -F/Library/Frameworks/R.framework/.. -framework R /opt/R/arm64/lib/libhdf5.a /opt/R/arm64/lib/libsz.a /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libz.tbd /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libdl.tbd /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libm.tbd -framework Foundation -framework IOKit -framework OpenCL
[100%] Built target nmflib
/Applications/CMake.app/Contents/bin/cmake -E cmake_progress_start /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/CMakeFiles 0
-- Install configuration: "RelWithDebInfo"
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/lib/libnmflib.so
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/include/libplanc/nmf/nmf_lib.hpp
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/include/libplanc/nmf/data.hpp
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/include/libplanc/nmf/config.h
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/include/libplanc/nmf/detect_blas.h
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/include/libplanc/nmf/nmflib_export.h
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/include/libplanc/nnls/nnls_lib.hpp
-- Installing: /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00_pkg_src/RcppPlanc/src/build/../libnmflib.so
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -I"/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers" -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -I"/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers" -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcppplanc_nmf.cpp -o rcppplanc_nmf.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -I"/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/System/Library/Frameworks/Accelerate.framework/Frameworks/vecLib.framework/Headers" -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcppplanc_nnls.cpp -o rcppplanc_nnls.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o RcppPlanc.so RcppExports.o rcppplanc_nmf.o rcppplanc_nnls.o -L./ -lnmflib -rpath @loader_path/../libs -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/RcppPlanc.Rcheck/00LOCK-RcppPlanc/00new/RcppPlanc/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppPlanc)