* installing *source* package ‘RTMB’ ...
** this is package ‘RTMB’ version ‘1.8’
** package ‘RTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RTMB.cpp -o RTMB.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RTMB_tape.cpp -o RTMB_tape.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TMB.cpp -o TMB.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bessel.cpp -o bessel.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c distributions.cpp -o distributions.o
In file included from RTMB_tape.cpp:1:
In file included from ./RTMB.h:In file included from TMB.cpp:2:
In file included from ./TMB.h:In file included from In file included from In file included from bessel.cpp:2:
In file included from ./RTMB.h:RTMB.cpp38:
6:6distributions.cpp:2:
In file included from :
:
In file included from In file included from In file included from ./RTMB.h:6:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hppRcppExports.cpp./TMB.h:./TMB.h:::38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from 5:
961/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse38:
In file included from :26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61In file included from ./TMB.h:38:
:
:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hppIn file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
96:
In file included from In file included from ./RTMB.h:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:
13:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]In file included from : :6:
In file included from ./TMB.h:38:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore273 | :61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.hIn file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:warning: variable 'count' set but not used [-Wunused-but-set-variable]:
96 /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:
273 273 | 273 26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273: | I n:
In IndeIn file included from dd13eex countxx c/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse = 0;
| :13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
^:o26:
:
warning: 273variable 'count' set but not used [-Wunused-but-set-variable]
In file included from c | /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: 273 | variable 'count' set but not used [-Wunused-but-set-variable] unt = 0; ount = 0;
Ind Index exc
o | 273 | ^| uc
nt = 0;
| ^
^
Iount = 0nd;
| ^
ex count = 0;
| ^
In file included from RTMB_tape.cpp:1:
In file included from ./RTMB.h:6:
In file included from In file included from distributions.cpp:2In file included from In file included from In file included from :
In file included from ./RTMB.h./TMB.h:38:
In file included from TMB.cppRcppExports.cpp:2In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
:
RTMB.cppIn file included from :6:
In file included from ./TMB.h:38:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLUIn file included from ./TMB.h:38:
:35In file included from :/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hppIn file included from :1:
5bessel.cpp::
In file included from ./RTMB.h:6:
In file included from ./TMB.h/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp96:
::38:
In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29In file included from ./RTMB.h:6:
:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:3596:
In file included from In file included from :
:./TMB.h2/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h::
In file included from ./RTMB.h::9: :78:6:
In file included from ./TMB.h:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:2938:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU9::warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
: :3835:
In file included from 29:
:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h78 | Index /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h::78:78:996:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse::n /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
warning: 29:96:
In file included from super_warning: 78 | variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from :
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:
variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
eIndex 9 /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLUt_post n:3578:
s | /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h: upe:= 0;78 | warning: 78rvariable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]_e
t 78 | /Index nsupe_posInd/r:_t ex n9 e=:s 0; // NtIndexuuper_em n warning: tsuvariable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Nper_et_po_po umber78 | Indssex nsuper_bt = 0;er o of // Nu_refet_pot = 0slaxed mst = ; // Nnodpu roes ieber of relstn postma0lo;axed rsnodxed snde ber oe/des = iored etree s in postorden 0;fr
// poe Nred etreeu| l/a ^
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79stordeNxemru:bd sn9:/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.he omber of relaxe:79:9: ddes inwarning: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]evariable 'nsuper_et' set but not used [-Wunused-but-set-variable]
r sn p
d etree o7979
| osto ^ord | eredde | f rela
s in p/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h etreeostxed snodo:Index nsuper_et es in p Ind=e r
deostorde079x ns ; // Number ruper_et =re 0; // edN:uof9: m| warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] ^ relaxe
detr 79 | Indexee
n
ds e| snodebu ^t/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.hpr
:ese
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h eer79:r 79::i/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.ho9f_et 9: := 0; // Numb :n the roerwarning: 79:9rvariable 'nsuper_et' set but not used [-Wunused-but-set-variable]e
iginwarning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
:alaxe warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | dlof relaxe et79 | Index79ree
| ^
sn o I | dnsupednde sno Ir_et =dndeesxes in the ori nsup 0; // Nx i n thenseginal etumberrr_ ee
| ^
of relaxed snodes uoet pie= 0; /rr_e/ Numbetiginal etr ee
| n= 0; // Nr of ^
umber of rel the oraxed snodesriginal elaxedin snthe o etrigreeinaodes in thel etree o
| ^
rigina
| ^
l etree
| ^
In file included from TMB.cpp:2:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:137:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMBad/TMBad.cpp:3110:52: warning: all paths through this function will call itself [-Winfinite-recursion]
3110 | ad_adapt F(const ad_adapt &x1, const ad_adapt &x2) {
| ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c expAv.cpp -o expAv.o
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c interpol.cpp -o interpol.o
In file included from expAv.cpp:1:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from expAv.cpp:1:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from interpol.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from interpol.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
expAv.cpp:104:10: warning: class 'PackWrap' was previously declared as a struct; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags]
104 | friend class TMBad::PackWrap<expm_series_rescaled>;
| ^
expAv.cpp:160:13: note: in instantiation of template class 'sparse_matrix_exponential::expm_series_rescaled<TMBad::global::ad_aug>' requested here
160 | F = new expm_t(AT_, N_, C_, cfg_);
| ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lapack.cpp -o lapack.o
In file included from lapack.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from lapack.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c math.cpp -o math.o
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c math_complex.cpp -o math_complex.o
In file included from math.cpp:4:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from math.cpp:4:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
In file included from math_complex.cpp:13:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from math_complex.cpp:13:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
4 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc.cpp -o misc.o
In file included from misc.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from misc.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c poshess.cpp -o poshess.o
In file included from poshess.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from poshess.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DTMB_EIGEN_DISABLE_WARNINGS -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c subset.cpp -o subset.o
In file included from subset.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from subset.cpp:2:
In file included from ./RTMB.h:6:
In file included from ./TMB.h:38:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/TMB/include/TMB.hpp:96:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
4 warnings generated.
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o RTMB.so RTMB.o RTMB_tape.o RcppExports.o TMB.o bessel.o distributions.o expAv.o interpol.o lapack.o math.o math_complex.o misc.o poshess.o subset.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/00LOCK-RTMB/00new/RTMB/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘fft’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselK’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselI’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselJ’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘besselY’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘dexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘df’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dt’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dnbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qgamma’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qexp’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qweibull’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qbeta’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘lbeta’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘eigen’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘svd’ from ‘base’ in package ‘RTMB’
(from the saved implicit definition)
Creating a generic function for ‘svd’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dlnorm’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘matrix’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘apply’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘sapply’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘ifelse’ from package ‘base’ in package ‘RTMB’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dmultinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘dcauchy’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘pnbinom’ from package ‘stats’ in package ‘RTMB’
Creating a generic function for ‘findInterval’ from package ‘base’ in package ‘RTMB’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RTMB)