* installing *source* package ‘RMCC’ ...
** this is package ‘RMCC’ version ‘0.1.2’
** package ‘RMCC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Algorithm.cpp -o Algorithm.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CoordinateInterval.cpp -o CoordinateInterval.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DisjointRegions.cpp -o DisjointRegions.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c DuplicatePoints.cpp -o DuplicatePoints.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Geometry3D.cpp -o Geometry3D.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GridBase.cpp -o GridBase.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c InterpolationRegion.cpp -o InterpolationRegion.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LocaleUtilities.cpp -o LocaleUtilities.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PointVector.cpp -o PointVector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_MCC.cpp -o R_MCC.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RasterSurface.cpp -o RasterSurface.o
In file included from Algorithm.cpp:21:
./Algorithm.h:37:12: warning: private field 'writeNongroundPts_' is not used [-Wunused-private-field]
37 | bool writeNongroundPts_;
| ^
./Algorithm.h:38:12: warning: private field 'writeRasterSurfaces_' is not used [-Wunused-private-field]
38 | bool writeRasterSurfaces_;
| ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RegularizedSpline.cpp -o RegularizedSpline.o
In file included from DisjointRegions.cpp:21:
In file included from ./DisjointRegions.h:20:
In file included from ./Grid.h:18:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array.hpp:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/base.hpp:25:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/storage_order.hpp:51:18: warning: 'assign' is deprecated: please use `fill` instead [-Wdeprecated-declarations]
51 | ascending_.assign(true);
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/multi_array_ref.hpp:113:18: note: in instantiation of member function 'boost::general_storage_order<2>::general_storage_order' requested here
113 | base_(base), storage_(c_storage_order()) {
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/multi_array_ref.hpp:463:5: note: in instantiation of member function 'boost::const_multi_array_ref<mcc::InterpolationRegion, 2, mcc::InterpolationRegion *>::const_multi_array_ref' requested here
463 | super_type(base,ranges) { }
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array.hpp:202:5: note: in instantiation of member function 'boost::multi_array_ref<mcc::InterpolationRegion, 2>::multi_array_ref' requested here
202 | super_type((T*)initial_base_,ranges),
| ^
./Grid.h:73:7: note: in instantiation of member function 'boost::multi_array<mcc::InterpolationRegion, 2>::multi_array' requested here
73 | values_(boost::extents[rows][columns]),
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/shared_ptr.h:303:37: note: in instantiation of member function 'mcc::Grid<mcc::InterpolationRegion>::Grid' requested here
303 | ::new ((void*)__get_elem()) _Tp(_VSTD::forward<_Args>(__args)...);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/shared_ptr.h:1023:55: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<mcc::Grid<mcc::InterpolationRegion>, std::allocator<mcc::Grid<mcc::InterpolationRegion>>>::__shared_ptr_emplace<int &, int &, mcc::XYCoordinates, double, double>' requested here
1023 | ::new ((void*)_VSTD::addressof(*__guard.__get())) _ControlBlock(__a, _VSTD::forward<_Args>(__args)...);
| ^
/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk/usr/include/c++/v1/__memory/shared_ptr.h:1032:19: note: in instantiation of function template specialization 'std::allocate_shared<mcc::Grid<mcc::InterpolationRegion>, std::allocator<mcc::Grid<mcc::InterpolationRegion>>, int &, int &, mcc::XYCoordinates, double, double, void>' requested here
1032 | return _VSTD::allocate_shared<_Tp>(allocator<_Tp>(), _VSTD::forward<_Args>(__args)...);
| ^
DisjointRegions.cpp:233:21: note: in instantiation of function template specialization 'std::make_shared<mcc::Grid<mcc::InterpolationRegion>, int &, int &, mcc::XYCoordinates, double, double, void>' requested here
233 | regions_ = std::make_shared< Grid<InterpolationRegion> >(nRows, nColumns, raster.lowerLeft(),
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/array.hpp:193:9: note: 'assign' has been explicitly marked deprecated here
193 | BOOST_DEPRECATED( "please use `fill` instead" )
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/config/compiler/clang.hpp:346:46: note: expanded from macro 'BOOST_DEPRECATED'
346 | #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
| ^
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c StackedPoints.cpp -o StackedPoints.o
In file included from RasterSurface.cpp:19:
In file included from ./RasterSurface.h:19:
In file included from ./Grid.h:18:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array.hpp:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/base.hpp:25:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/storage_order.hpp:51:18: warning: 'assign' is deprecated: please use `fill` instead [-Wdeprecated-declarations]
51 | ascending_.assign(true);
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/multi_array_ref.hpp:113:18: note: in instantiation of member function 'boost::general_storage_order<2>::general_storage_order' requested here
113 | base_(base), storage_(c_storage_order()) {
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array/multi_array_ref.hpp:463:5: note: in instantiation of member function 'boost::const_multi_array_ref<double, 2, double *>::const_multi_array_ref' requested here
463 | super_type(base,ranges) { }
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/multi_array.hpp:202:5: note: in instantiation of member function 'boost::multi_array_ref<double, 2>::multi_array_ref' requested here
202 | super_type((T*)initial_base_,ranges),
| ^
RasterSurface.cpp:66:39: note: in instantiation of member function 'boost::multi_array<double, 2>::multi_array' requested here
66 | boost::multi_array<Coordinate, 2> averages(boost::extents[kernelSize][columns()]);
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/array.hpp:193:9: note: 'assign' has been explicitly marked deprecated here
193 | BOOST_DEPRECATED( "please use `fill` instead" )
| ^
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include/boost/config/compiler/clang.hpp:346:46: note: expanded from macro 'BOOST_DEPRECATED'
346 | #define BOOST_DEPRECATED(msg) __attribute__((deprecated(msg)))
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SurfaceInterpolation.cpp -o SurfaceInterpolation.o
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c UnclassifiedPoints.cpp -o UnclassifiedPoints.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/BH/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tpsdemo/spline.cpp -o tpsdemo/spline.o
SurfaceInterpolation.cpp:109:9: warning: variable 'nSplinesComputed' set but not used [-Wunused-but-set-variable]
109 | int nSplinesComputed = 0;
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o RMCC.so ./Algorithm.o ./CoordinateInterval.o ./DisjointRegions.o ./DuplicatePoints.o ./Geometry3D.o ./GridBase.o ./InterpolationRegion.o ./LocaleUtilities.o ./PointVector.o ./R_MCC.o ./RasterSurface.o ./RcppExports.o ./RegularizedSpline.o ./StackedPoints.o ./SurfaceInterpolation.o ./UnclassifiedPoints.o tpsdemo/spline.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/RMCC.Rcheck/00LOCK-RMCC/00new/RMCC/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RMCC)