* using log directory ‘/Volumes/Builds/packages/big-sur-arm64/results/4.5/PKPDsim.Rcheck’
* using R version 4.5.0 beta (2025-03-29 r88069)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.4
* using session charset: UTF-8
* checking for file ‘PKPDsim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PKPDsim’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PKPDsim’ can be installed ... [20s/26s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-macos-arm64/PKPDsim-00install.html' for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [70s/98s] ERROR
  Running ‘testthat.R’ [70s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(PKPDsim)
  > 
  > test_check("PKPDsim")
  Simulating 3 individuals.
  Recalculating infusion rates to reflect bioavailability for infusion.
  Recalculating infusion rates to reflect bioavailability for infusion.
  [ FAIL 1 | WARN 0 | SKIP 27 | PASS 494 ]
  
  ══ Skipped tests (27) ══════════════════════════════════════════════════════════
  • On CRAN (27): 'test_advan_with_auc.R:71:3', 'test_advan_with_auc.R:84:3',
    'test_advan_with_auc.R:106:3', 'test_advan_with_auc.R:131:3',
    'test_advan_with_auc.R:153:3', 'test_advan_with_covariates.R:2:3',
    'test_bioav_def.R:8:3', 'test_bioav_def.R:27:3',
    'test_calc_ss_analytic.R:74:3', 'test_calc_ss_analytic.R:100:3',
    'test_calc_ss_analytic.R:110:3', 'test_calc_ss_analytic.R:119:3',
    'test_cmt_mapping.R:31:3', 'test_get_var_y.R:25:3', 'test_get_var_y.R:49:3',
    'test_get_var_y.R:93:3', 'test_get_var_y.R:132:3', 'test_iov.R:84:3',
    'test_model_from_api.R:17:3', 'test_multi_obs.R:168:3',
    'test_new_ode_model.R:2:3', 'test_new_ode_model.R:76:3',
    'test_new_ode_model.R:137:3', 'test_parameters_table.R:2:3',
    'test_pkpd_combined.R:2:3', 'test_sim_lagtime.R:2:3',
    'test_timevar_cov.R:1:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_is_positive_definite.R:108:3'): Matrix where numerical solver issues result in very tiny complex components ──
  `is_x_positive_def <- is_positive_definite(x)` did not throw the expected warning.
  
  [ FAIL 1 | WARN 0 | SKIP 27 | PASS 494 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [81s/109s] OK
* checking PDF version of manual ... [7s/8s] OK
* DONE
Status: 1 ERROR
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 4:28