* installing *source* package ‘HDclust’ ...
** this is package ‘HDclust’ version ‘1.0.4’
** package ‘HDclust’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether clang++ -arch arm64 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... clang++ -arch arm64 -std=gnu++17 -E
checking for clang++ -arch arm64 -std=gnu++17 option to support OpenMP... unsupported
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cluster.cpp -o cluster.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c estimate.cpp -o estimate.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c matrix.cpp -o matrix.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modal.cpp -o modal.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c prob.cpp -o prob.o
In file included from prob.cpp:30:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp.h:27:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/RcppCommon.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to In file included from estimate.cpp:29:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include/progress.hpp:12:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include/interruptable_progress_monitor.hpp:15:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include/interrupts.hpp:21:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp.h:27:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/RcppCommon.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
35 | #pragma message "Rinternahard-to-dels.h has beenbug errors, and included is not n before ecessary. SaIn file included from modal.cpp:28:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp.h:27:
In file included from ny/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/RcppCommon.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include/Rcpp/r/check_r_headers.h:35:13: warning: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410 [-W#pragma-messages]
35 | #pragmaRecpp e message "Rinternals.h has been include https://gheadersd before anithub..cy Rcom/RcppThis can leappCore/ headerRcpp/issuesd tos/1410"
| ^
. hard-to-deb This can lead to hard-ug eto-debrrors, and is nug ot errorsnecessary. See htt, aps:nd is //githubnot.co nem/Rcessary. See https://cppgitCorhube/R.cocppm/R/iscppsueCors/1e/R410cpp"
| ^
/issues/1410"
| ^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_findModes.cpp -o rcpp_findModes.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_testsync.cpp -o rcpp_testsync.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_trainmaster.cpp -o rcpp_trainmaster.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppProgress/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_rcpp.cpp -o utils_rcpp.o
1 warning generated.
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o HDclust.so RcppExports.o cluster.o estimate.o matrix.o modal.o prob.o rcpp_findModes.o rcpp_testsync.o rcpp_trainmaster.o utils_rcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/HDclust.Rcheck/00LOCK-HDclust/00new/HDclust/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HDclust)