- using R version 4.6.0 alpha (2026-03-26 r89725)
- using platform: aarch64-apple-darwin23
- R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
- running under: macOS Sequoia 15.7.1
- using session charset: UTF-8
* current time: 2026-03-27 23:24:19 UTC
- checking for file ‘GseaVis/DESCRIPTION’ ... OK
- this is package ‘GseaVis’ version ‘0.0.5’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘GseaVis’ can be installed ... [6s/6s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/4s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [2s/2s] ERROR
Running examples in ‘GseaVis-Ex.R’ failed
The error most likely occurred in:
> ### Name: gseaNb
> ### Title: gseaNb
> ### Aliases: gseaNb
>
> ### ** Examples
>
> # load data
> test_data <- system.file("extdata", "gseaRes.RDS", package = "GseaVis")
> gseaRes <- readRDS(test_data)
>
> # all plot
> gseaNb(object = gseaRes,
+ geneSetID = 'GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS',
+ subPlot = 2)
Error in `map()`:
ℹ In index: 1.
Caused by error in `get()`:
! object 'gseaScores' not found
Backtrace:
▆
1. ├─GseaVis::gseaNb(...)
2. │ └─purrr::map_df(...)
3. │ └─purrr::map(.x, .f, ...)
4. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
5. │ ├─purrr:::with_indexed_errors(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ ├─purrr:::call_with_cleanup(...)
8. │ └─GseaVis (local) .f(.x[[i]], ...)
9. │ ├─gsInfo(object, geneSetID = setid) %>% dplyr::mutate(id = setid)
10. │ └─GseaVis::gsInfo(object, geneSetID = setid)
11. │ └─utils::getFromNamespace("gseaScores", "DOSE")
12. │ └─base::get(x, envir = ns, inherits = FALSE)
13. ├─dplyr::mutate(., id = setid)
14. └─base::.handleSimpleError(...)
15. └─purrr (local) h(simpleError(msg, call))
16. └─cli::cli_abort(...)
17. └─rlang::abort(...)
Execution halted
- checking PDF version of manual ... [2s/2s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '