* installing *source* package ‘BoolNet’ ...
** this is package ‘BoolNet’ version ‘2.1.9’
** package ‘BoolNet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using SDK: ‘MacOSX14.5.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attractor_info.c -o attractor_info.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c attractor_search_interface.c -o attractor_search_interface.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c common.c -o common.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c picosat.c -o picosat.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c probabilistic_boolean_network.c -o probabilistic_boolean_network.o
picosat.c:2287:50: warning: variable 'count_resolved' set but not used [-Wunused-but-set-variable]
2287 | unsigned num_true, num_undef, num_false, size, count_resolved;
| ^
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c reconstruct_network.c -o reconstruct_network.o
picosat.c:3263:15: warning: variable 'fmt' set but not used [-Wunused-but-set-variable]
3263 | const char *fmt;
| ^
picosat.c:3264:17: warning: variable 'e' set but not used [-Wunused-but-set-variable]
3264 | unsigned tmp, e;
| ^
picosat.c:3776:10: warning: unused variable 'start' [-Wunused-variable]
3776 | double start = picosat_time_stamp ();
| ^~~~~
picosat.c:5333:12: warning: variable 'collect' set but not used [-Wunused-but-set-variable]
5333 | unsigned collect, delta;
| ^
picosat.c:6466:12: warning: variable 'num_non_false' set but not used [-Wunused-but-set-variable]
6466 | unsigned num_non_false;
| ^
picosat.c:7024:38: warning: variable 'npartial' set but not used [-Wunused-but-set-variable]
7024 | unsigned * occs, maxoccs, tmpoccs, npartial;
| ^
picosat.c:7377:24: warning: unused variable 'norig' [-Wunused-variable]
7377 | int i, j, ilit, len, norig = ps->alshead - ps->als, nwork, * work, res;
| ^~~~~
picosat.c:7991:12: warning: variable 'redlits' set but not used [-Wunused-but-set-variable]
7991 | unsigned redlits;
| ^
picosat.c:8175:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
8175 | unsigned n;
| ^
picosat.c:6967:21: warning: unused function 'enumstr' [-Wunused-function]
6967 | static const char * enumstr (int i) {
| ^~~~~~~
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sat_search.c -o sat_search.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c statespace_search.c -o statespace_search.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c symbolic_network.c -o symbolic_network.o
statespace_search.c:1243:16: warning: variable 't' set but not used [-Wunused-but-set-variable]
1243 | unsigned int t = 0;
| ^
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c symbolic_simulator.c -o symbolic_simulator.o
1 warning generated.
11 warnings generated.
clang -arch arm64 -std=gnu23 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BoolNet.so attractor_info.o attractor_search_interface.o common.o init.o picosat.o probabilistic_boolean_network.o reconstruct_network.o sat_search.o statespace_search.o symbolic_network.o symbolic_simulator.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/BoolNet.Rcheck/00LOCK-BoolNet/00new/BoolNet/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoolNet)