Install log for 'BayesRGMM'

* installing *source* package ‘BayesRGMM’ ...
** this is package ‘BayesRGMM’ version ‘2.2’
** package ‘BayesRGMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
using C++11
using SDK: ‘MacOSX14.5.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c CPREMs.cpp -o CPREMs.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c ProbitML.cpp -o ProbitML.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c ProbitML_ARMA_KB.cpp -o ProbitML_ARMA_KB.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c Utility.cpp -o Utility.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include' -I/opt/R/arm64/include     -fPIC  -falign-functions=64 -Wall -g -O2   -c tmvrnormGibbs_KJLEE.cpp -o tmvrnormGibbs_KJLEE.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from tmvrnormGibbs_KJLEE.cpp:1:
In file included from ./tmvrnormGibbs_KJLEE.h:7:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from Utility.cpp:4:
In file included from ./ProbitML.h:39:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from CPREMs.cpp:11:
In file included from ./CPREMs.h:40:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from ProbitML.cpp:11:
In file included from ./ProbitML.h:39:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
In file included from ProbitML_ARMA_KB.cpp:11:
In file included from ./ProbitML_ARMA_KB.h:39:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppDist/include/RcppDist.h:26:
In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo.h:29:
/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:17: warning: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more. [-W#pragma-messages]
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                 ^
ProbitML.cpp:377:48: warning: variable 'ESS' set but not used [-Wunused-but-set-variable]
  377 |     double pit, CPO_tmp, ESS_GP_tmp, RJ1, RJ2, ESS=0., GP=0.;
      |                                                ^
ProbitML.cpp:377:56: warning: variable 'GP' set but not used [-Wunused-but-set-variable]
  377 |     double pit, CPO_tmp, ESS_GP_tmp, RJ1, RJ2, ESS=0., GP=0.;
      |                                                        ^
CPREMs.cpp:538:43: warning: variable 'ESS' set but not used [-Wunused-but-set-variable]
  538 |     double CPO_tmp, ESS_GP_tmp, RJ1, RJ2, ESS=0., GP=0.;
      |                                           ^
CPREMs.cpp:538:51: warning: variable 'GP' set but not used [-Wunused-but-set-variable]
  538 |     double CPO_tmp, ESS_GP_tmp, RJ1, RJ2, ESS=0., GP=0.;
      |                                                   ^
ProbitML_ARMA_KB.cpp:626:26: warning: variable 'ESS' set but not used [-Wunused-but-set-variable]
  626 |     double pit, CPO_tmp, ESS=0, GP=0, ESS_GP_tmp, RJ1, RJ2;
      |                          ^
ProbitML_ARMA_KB.cpp:626:33: warning: variable 'GP' set but not used [-Wunused-but-set-variable]
  626 |     double pit, CPO_tmp, ESS=0, GP=0, ESS_GP_tmp, RJ1, RJ2;
      |                                 ^
1 warning generated.
1 warning generated.
1 warning generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BayesRGMM.so CPREMs.o ProbitML.o ProbitML_ARMA_KB.o RcppExports.o Utility.o tmvrnormGibbs_KJLEE.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/BayesRGMM.Rcheck/00LOCK-BayesRGMM/00new/BayesRGMM/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesRGMM)