* installing *source* package ‘zoomerjoin’ ...
** this is package ‘zoomerjoin’ version ‘0.2.1’
** package ‘zoomerjoin’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.86.0 (adf9b6ad1 2025-02-28)
Using rustc 1.86.0 (05f9846f8 2025-03-31) (Fedora 1.86.0-1.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
# Check if NOT_CRAN is false and unzip vendor.tar.xz if so
if [ "" != "true" ]; then \
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/.cargo && \
cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/.cargo/config.toml; \
fi; \
fi
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/.cargo && \
export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target && \
rm ./rust/Cargo.lock
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Locking 58 packages to latest compatible versions
Compiling autocfg v1.4.0
Compiling libc v0.2.171
Compiling crossbeam-utils v0.8.21
Compiling libm v0.2.11
Compiling num-traits v0.2.19
Compiling cfg-if v1.0.0
Compiling zerocopy v0.8.24
Compiling crossbeam-epoch v0.9.18
Compiling proc-macro2 v1.0.94
Compiling rayon-core v1.12.1
Compiling crossbeam-deque v0.8.6
Compiling getrandom v0.2.15
Compiling matrixmultiply v0.3.9
Compiling either v1.15.0
Compiling unicode-ident v1.0.18
Compiling build-print v0.1.1
Compiling extendr-ffi v0.8.0
Compiling ppv-lite86 v0.2.21
Compiling rand_core v0.6.4
Compiling rawpointer v0.2.1
Compiling rand_chacha v0.3.1
Compiling rayon v1.10.0
Compiling quote v1.0.40
Compiling num-complex v0.4.6
Compiling num-integer v0.1.46
Compiling lock_api v0.4.12
Compiling paste v1.0.15
Compiling parking_lot_core v0.9.10
Compiling ndarray v0.16.1
Compiling syn v2.0.100
Compiling rand v0.8.5
Compiling extendr-api v0.8.0
Compiling scopeguard v1.2.0
Compiling smallvec v1.15.0
Compiling once_cell v1.21.3
Compiling rand_distr v0.4.3
Compiling hashbrown v0.14.5
Compiling ndarray-rand v0.15.0
Compiling itertools v0.14.0
Compiling rustc-hash v2.1.1
Compiling nohash-hasher v0.2.0
Compiling dashmap v6.1.0
Compiling extendr-macros v0.8.0
Compiling zoomerjoin v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/rust)
note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 1m 42s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/.cargo;
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o zoomerjoin.so entrypoint.o -L./rust/target/release -lzoomerjoin
rm -Rf /data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/.cargo /data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/zoomerjoin/src'
installing to /data/gannet/ripley/R/packages/tests-devel/zoomerjoin.Rcheck/00LOCK-zoomerjoin/00new/zoomerjoin/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (zoomerjoin)