* installing *source* package ‘yaml12’ ...
** this is package ‘yaml12’ version ‘0.1.0’
** package ‘yaml12’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
Using rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/yaml12/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c entrypoint.c -o entrypoint.o
if [ -d ./vendor ]; then \
	echo "=== Using offline vendor directory ==="; \
	mkdir -p /data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo && \
	cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo/config.toml; \
elif [ -f ./rust/vendor.tar.xz ]; then \
	echo "=== Using offline vendor tarball ==="; \
	tar xf rust/vendor.tar.xz && \
	mkdir -p /data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo && \
	cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo/config.toml; \
fi
=== Using offline vendor tarball ===
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo && \
export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target 
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
   Compiling proc-macro2 v1.0.103
   Compiling quote v1.0.42
   Compiling unicode-ident v1.0.22
   Compiling syn v2.0.111
   Compiling autocfg v1.5.0
   Compiling num-traits v0.2.19
   Compiling extendr-ffi v0.8.1 (https://github.com/extendr/extendr?rev=a3e35fb42a008d0c209e61d994143d00a86e350f#a3e35fb4)
   Compiling thiserror v2.0.17
   Compiling thiserror-impl v2.0.17
   Compiling foldhash v0.1.5
   Compiling paste v1.0.15
   Compiling hashbrown v0.15.5
   Compiling arraydeque v0.5.1
   Compiling extendr-api v0.8.1 (https://github.com/extendr/extendr?rev=a3e35fb42a008d0c209e61d994143d00a86e350f#a3e35fb4)
   Compiling cfg-if v1.0.4
   Compiling lazy_static v1.5.0
   Compiling encoding_rs v0.8.35
   Compiling extendr-macros v0.8.1 (https://github.com/extendr/extendr?rev=a3e35fb42a008d0c209e61d994143d00a86e350f#a3e35fb4)
   Compiling ordered-float v5.1.0
   Compiling saphyr-parser v0.0.6 (https://github.com/t-kalinowski/saphyr?branch=r-patched#73f6994f)
   Compiling hashlink v0.10.0
   Compiling once_cell v1.21.3
   Compiling saphyr v0.0.6 (https://github.com/t-kalinowski/saphyr?branch=r-patched#73f6994f)
   Compiling yaml12 v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/yaml12/src/rust)
note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.

note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc

    Finished `release` profile [optimized] target(s) in 2m 39s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo;
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o yaml12.so entrypoint.o -L./rust/target/release -lyaml12
rm -Rf /data/gannet/ripley/R/packages/tests-devel/yaml12/src/.cargo /data/gannet/ripley/R/packages/tests-devel/yaml12/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/yaml12/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/yaml12/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/yaml12/src'
installing to /data/gannet/ripley/R/packages/tests-devel/yaml12.Rcheck/00LOCK-yaml12/00new/yaml12/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (yaml12)