* installing *source* package ‘visPedigree’ ...
** this is package ‘visPedigree’ version ‘1.0.1’
** package ‘visPedigree’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/visPedigree/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_USE_OPENMP -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_USE_OPENMP -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c pedigree_calculators.cpp -o pedigree_calculators.o
pedigree_calculators.cpp: In function ‘arma::mat cpp_calculate_D(Rcpp::IntegerVector, Rcpp::IntegerVector, const arma::mat&)’:
pedigree_calculators.cpp:369:18: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  369 |     if (A.n_rows != n || A.n_cols != n) {
      |         ~~~~~~~~~^~~~
pedigree_calculators.cpp:369:35: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  369 |     if (A.n_rows != n || A.n_cols != n) {
      |                          ~~~~~~~~~^~~~
pedigree_calculators.cpp: In function ‘arma::vec cpp_solve_A(Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::NumericVector, arma::vec)’:
pedigree_calculators.cpp:481:56: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  481 |     if (dam.size() != n || dii.size() != n || b.size() != n) {
      |                                               ~~~~~~~~~^~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o visPedigree.so RcppExports.o pedigree_calculators.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/visPedigree/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/visPedigree/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/visPedigree/src'
installing to /data/gannet/ripley/R/packages/tests-devel/visPedigree.Rcheck/00LOCK-visPedigree/00new/visPedigree/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (visPedigree)