* installing *source* package ‘vegan’ ...
** this is package ‘vegan’ version ‘2.7-2’
** package ‘vegan’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using Fortran compiler: ‘GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/vegan/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c data2hill.c -o data2hill.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c decorana.f -o decorana.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c getF.c -o getF.o
In file included from /data/gannet/ripley/R/R-devel/include/R.h:78,
                 from getF.c:11:
getF.c: In function ‘do_getF’:
getF.c:442:30: warning: ‘Zqr’ may be used uninitialized [-Wmaybe-uninitialized]
  442 |                     F77_CALL(dqrsl)(Zqr, &nr, &nr, &Zqrank, Zqraux,
      |                              ^
/data/gannet/ripley/R/R-devel/include/R_ext/RS.h:98:25: note: in definition of macro ‘F77_CALL’
   98 | # define F77_CALL(x)    x ## _
      |                         ^
getF.c:325:13: note: ‘Zqr’ was declared here
  325 |     double *Zqr, *Zqraux;
      |             ^~~
getF.c:442:30: warning: ‘Zqraux’ may be used uninitialized [-Wmaybe-uninitialized]
  442 |                     F77_CALL(dqrsl)(Zqr, &nr, &nr, &Zqrank, Zqraux,
      |                              ^
/data/gannet/ripley/R/R-devel/include/R_ext/RS.h:98:25: note: in definition of macro ‘F77_CALL’
   98 | # define F77_CALL(x)    x ## _
      |                         ^
getF.c:325:19: note: ‘Zqraux’ was declared here
  325 |     double *Zqr, *Zqraux;
      |                   ^~~~~~
getF.c:369:13: warning: ‘transY’ may be used uninitialized [-Wmaybe-uninitialized]
  369 |     double *transY;
      |             ^~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c goffactor.c -o goffactor.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c monoMDS.f -o monoMDS.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c nestedness.c -o nestedness.o
gfortran  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c ordering.f -o ordering.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c pnpoly.c -o pnpoly.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c stepacross.c -o stepacross.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c vegdist.c -o vegdist.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o vegan.so data2hill.o decorana.o getF.o goffactor.o init.o monoMDS.o nestedness.o ordering.o pnpoly.o stepacross.o vegdist.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/vegan/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/vegan/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/vegan/src'
installing to /data/gannet/ripley/R/packages/tests-devel/vegan.Rcheck/00LOCK-vegan/00new/vegan/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vegan)