* installing *source* package ‘varPro’ ... ** this is package ‘varPro’ version ‘1.0.0’ ** package ‘varPro’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/varPro/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c R_init_varPro.c -o R_init_varPro.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entry.c -o entry.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entryGeneric.c -o entryGeneric.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c importance.c -o importance.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c internal.c -o internal.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c nodeOps.c -o nodeOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sexpOutgoing.c -o sexpOutgoing.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stackOutput.c -o stackOutput.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c survivalUtil.c -o survivalUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c termOps.c -o termOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c treeOps.c -o treeOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c varProAux.c -o varProAux.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c varProMain.c -o varProMain.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/bootstrap.c -o shared/bootstrap.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/classification.c -o shared/classification.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/diagnostic.c -o shared/diagnostic.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/error.c -o shared/error.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/factorOps.c -o shared/factorOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/internalCore.c -o shared/internalCore.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/leafLink.c -o shared/leafLink.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/nativeUtil.c -o shared/nativeUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/nodeBaseOps.c -o shared/nodeBaseOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/nrutil.c -o shared/nrutil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackParallel.c -o shared/stackParallel.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/polarityNew.c -o shared/polarityNew.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/preprocessForestRecord.c -o shared/preprocessForestRecord.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/quantile.c -o shared/quantile.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/random.c -o shared/random.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/regression.c -o shared/regression.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/restoreTree.c -o shared/restoreTree.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/sampling.c -o shared/sampling.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/sexpIO.c -o shared/sexpIO.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/sortedLink.c -o shared/sortedLink.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/splitInfo.c -o shared/splitInfo.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stack.c -o shared/stack.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackAuxiliaryInfo.c -o shared/stackAuxiliaryInfo.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackForestObjects.c -o shared/stackForestObjects.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackIncoming.c -o shared/stackIncoming.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackMembershipVectors.c -o shared/stackMembershipVectors.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackPreDefined.c -o shared/stackPreDefined.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/survival.c -o shared/survival.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/termBaseOps.c -o shared/termBaseOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/shared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/trace.c -o shared/trace.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o varPro.so R_init_varPro.o entry.o entryGeneric.o importance.o internal.o nodeOps.o sexpOutgoing.o stackOutput.o survivalUtil.o termOps.o treeOps.o varProAux.o varProMain.o shared/bootstrap.o shared/classification.o shared/diagnostic.o shared/error.o shared/factorOps.o shared/internalCore.o shared/leafLink.o shared/nativeUtil.o shared/nodeBaseOps.o shared/nrutil.o shared/stackParallel.o shared/polarityNew.o shared/preprocessForestRecord.o shared/quantile.o shared/random.o shared/regression.o shared/restoreTree.o shared/sampling.o shared/sexpIO.o shared/sortedLink.o shared/splitInfo.o shared/stack.o shared/stackAuxiliaryInfo.o shared/stackForestObjects.o shared/stackIncoming.o shared/stackMembershipVectors.o shared/stackPreDefined.o shared/survival.o shared/termBaseOps.o shared/trace.o -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/varPro/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/varPro/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/varPro/src' installing to /data/gannet/ripley/R/packages/tests-devel/varPro.Rcheck/00LOCK-varPro/00new/varPro/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (varPro)