* installing *source* package ‘tsissm’ ...
** this is package ‘tsissm’ version ‘1.0.3’
** package ‘tsissm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/TMB/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/TMB/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c filters.cpp -o filters.o
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:28,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
from filters.cpp:1:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
(cd TMB; /data/localhost/ripley/R/R-devel/bin/Rscript \
--no-save --no-restore compile.R '')
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src/TMB'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -I"/data/localhost/ripley/R/test-dev/TMB/include" -I"/data/localhost/ripley/R/test-dev/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_tsissm_TMBExports -DCPPAD_FRAMEWORK -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/TMB/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tsissm_TMBExports.cpp -o tsissm_TMBExports.o
In file included from /data/localhost/ripley/R/test-dev/TMB/include/cppad/local/ad_fun.hpp:602,
from /data/localhost/ripley/R/test-dev/TMB/include/cppad/cppad.hpp:86,
from /data/localhost/ripley/R/test-dev/TMB/include/TMB.hpp:125,
from tsissm_TMBExports.cpp:3:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector<struct_old_variable>&, size_t, size_t, const Base*, const CppAD::vector<long unsigned int>&, short unsigned int&) [with Base = CppAD::AD<double>]’:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized]
782 | code = hash_code(
| ~~~~~~~~~^
783 | op ,
| ~~~~~~~~~~~~~~~~~~~~~
784 | new_arg ,
| ~~~~~~~~~~~~~~~~~~~~~
785 | npar ,
| ~~~~~~~~~~~~~~~~~~~~~
786 | par
| ~~~
787 | );
| ~
In file included from /data/localhost/ripley/R/test-dev/TMB/include/cppad/local/recorder.hpp:14,
from /data/localhost/ripley/R/test-dev/TMB/include/cppad/local/ad.hpp:22,
from /data/localhost/ripley/R/test-dev/TMB/include/cppad/cppad.hpp:78:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = AD<double>]’ declared here
125 | unsigned short hash_code(
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here
715 | addr_t new_arg[2];
| ^~~~~~~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector<struct_old_variable>&, size_t, size_t, const Base*, const CppAD::vector<long unsigned int>&, short unsigned int&) [with Base = double]’:
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized]
782 | code = hash_code(
| ~~~~~~~~~^
783 | op ,
| ~~~~~~~~~~~~~~~~~~~~~
784 | new_arg ,
| ~~~~~~~~~~~~~~~~~~~~~
785 | npar ,
| ~~~~~~~~~~~~~~~~~~~~~
786 | par
| ~~~
787 | );
| ~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = double]’ declared here
125 | unsigned short hash_code(
| ^~~~~~~~~
/data/localhost/ripley/R/test-dev/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here
715 | addr_t new_arg[2];
| ^~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o tsissm_TMBExports.so tsissm_TMBExports.o
make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src/TMB'
make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src/TMB'
make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src/TMB'
[1] TRUE
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o tsissm.so RcppExports.o filters.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/tsissm/src'
installing to /data/localhost/ripley/R/packages/tests-devel/tsissm.Rcheck/00LOCK-tsissm/00new/tsissm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tsissm)