Install log for 'treestats'

* installing *source* package ‘treestats’ ...
** package ‘treestats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240503 (prerelease)’
using C++20
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c beta.cpp -o beta.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c brts.cpp -o brts.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c centralities.cpp -o centralities.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c colless.cpp -o colless.o
In file included from brts.cpp:21:
../inst/include/gamma.h: In function 'double calc_gamma2(const std::vector<int>&, const std::vector<double>&)':
../inst/include/gamma.h:60:23: warning: comparison of integer expressions of different signedness: 'const __gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type' {aka 'const int'} and 'long unsigned int' [-Wsign-compare]
   60 |     if (t_edge[i + 1] > n) {
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c depth.cpp -o depth.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ladder.cpp -o ladder.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c laplacian.cpp -o laplacian.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mpd.cpp -o mpd.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c phylo.cpp -o phylo.o
g++-14 -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sackin.cpp -o sackin.o
In file included from phylo.cpp:24:
../inst/include/imbalance_steps.h: In function 'ltable imbal_steps::swap_deepest(const ltable&, int*, bool*)':
../inst/include/imbalance_steps.h:140:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::array<double, 4> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  140 |   for (focal_index = 0; focal_index < ltab.size(); ++focal_index) {
      |                         ~~~~~~~~~~~~^~~~~~~~~~~~~
g++-14 -std=gnu++20 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o treestats.so RcppExports.o beta.o brts.o centralities.o colless.o depth.o ladder.o laplacian.o mpd.o phylo.o sackin.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
installing to /data/gannet/ripley/R/packages/tests-devel/treestats.Rcheck/00LOCK-treestats/00new/treestats/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (treestats)