Install log for 'treestats'

* installing *source* package ‘treestats’ ...
** this is package ‘treestats’ version ‘1.70.5’
** package ‘treestats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c beta.cpp -o beta.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c brts.cpp -o brts.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c centralities.cpp -o centralities.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c colless.cpp -o colless.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c depth.cpp -o depth.o
In file included from /usr/include/c++/15/x86_64-redhat-linux/bits/c++allocator.h:33,
                 from /usr/include/c++/15/bits/allocator.h:46,
                 from /usr/include/c++/15/vector:65,
                 from depth.cpp:15:
In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = int]’,
    inlined from ‘static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = int]’ at /usr/include/c++/15/bits/alloc_traits.h:649:23,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:396:19,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:392:7,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:375:15,
    inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:805:7,
    inlined from ‘size_t ltab::stat::max_del_width()’ at ../inst/include/ltable.h:179:3,
    inlined from ‘double calc_max_del_width_ltable_cpp(const Rcpp::NumericMatrix&)’ at depth.cpp:36:25:
/usr/include/c++/15/bits/new_allocator.h:172:66: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘<unknown>’ with nonzero offset [8, 9223372036854775800] [-Wfree-nonheap-object]
  172 |         _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
      |                                                                  ^
In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = int]’,
    inlined from ‘static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = int]’ at /usr/include/c++/15/bits/alloc_traits.h:614:28,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:387:33,
    inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:405:44,
    inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:341:26,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const allocator_type&) [with _Tp = int; _Alloc = std::allocator<int>]’ at /usr/include/c++/15/bits/stl_vector.h:587:47,
    inlined from ‘size_t ltab::stat::max_del_width()’ at ../inst/include/ltable.h:174:42,
    inlined from ‘double calc_max_del_width_ltable_cpp(const Rcpp::NumericMatrix&)’ at depth.cpp:36:25:
/usr/include/c++/15/bits/new_allocator.h:151:73: note: returned from ‘void* operator new(std::size_t)’
  151 |         return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
      |                                                                         ^
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ladder.cpp -o ladder.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c laplacian.cpp -o laplacian.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mpd.cpp -o mpd.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c phylo.cpp -o phylo.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/nloptr/include' -I/usr/local/include   -I../inst/include -I. -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sackin.cpp -o sackin.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o treestats.so RcppExports.o beta.o brts.o centralities.o colless.o depth.o ladder.o laplacian.o mpd.o phylo.o sackin.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/treestats/src'
installing to /data/gannet/ripley/R/packages/tests-devel/treestats.Rcheck/00LOCK-treestats/00new/treestats/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (treestats)