- using R Under development (unstable) (2022-05-07 r82325)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘trajectories/DESCRIPTION’ ... OK
- this is package ‘trajectories’ version ‘0.2-3’
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘taxidata’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘trajectories’ can be installed ... [18s/23s] OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s/28s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [64s/78s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [10s/13s] OK
Running ‘tracks.R’ [10s/12s]
Comparing ‘tracks.Rout’ to ‘tracks.Rout.save’ ...10,14c10
< Please note that rgdal will be retired by the end of 2023,
< plan transition to sf/stars/terra functions using GDAL and PROJ
< at your earliest convenience.
<
< rgdal: version: 1.5-31, (SVN revision 1171)
---
> rgdal: version: 1.3-3, (SVN revision 759)
16,17c12,13
< Loaded GDAL runtime: GDAL 3.4.2, released 2022/03/08
< Path to GDAL shared files: /usr/local/share/gdal
---
> Loaded GDAL runtime: GDAL 2.2.3, released 2017/11/20
> Path to GDAL shared files: /usr/share/gdal/2.2
19,24c15,17
< Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
< Path to PROJ shared files: /data/gannet/ripley/.local/share/proj:/usr/local/share/proj:/usr/local/share/proj
< PROJ CDN enabled: FALSE
< Linking to sp version:1.4-7
< To mute warnings of possible GDAL/OSR exportToProj4() degradation,
< use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
---
> Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493]
> Path to PROJ.4 shared files: (autodetected)
> Linking to sp version: 1.3-1
41c34
< > crs = CRS("+proj=longlat +datum=WGS84")
---
> > crs = CRS("+proj=longlat +ellps=WGS84")
171c164
< > # stopifnot(all(sapply(all, function(x) proj4string(x) == "+proj=longlat +ellps=WGS84")))
---
> > stopifnot(all(sapply(all, function(x) proj4string(x) == "+proj=longlat +ellps=WGS84")))
569,576c562,565
< 1: In .local(x, i, j = j, ..., value) :
< replacing distance in connections slot
< 2: In .local(x, i, j = j, ..., value) :
< replacing distance in connections slot
< 3: In .local(x, i, j = j, ..., value) :
< replacing distance in connections slot
< 4: In .local(x, i, j = j, ..., value) :
< replacing distance in connections slot
---
> 1: In .local(x, i, j, ..., value) : replacing distance in connections slot
> 2: In .local(x, i, j, ..., value) : replacing distance in connections slot
> 3: In .local(x, i, j, ..., value) : replacing distance in connections slot
> 4: In .local(x, i, j, ..., value) : replacing distance in connections slot
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [26s/35s] OK
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE