• using R Under development (unstable) (2022-05-07 r82325)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘trajectories/DESCRIPTION’ ... OK
• this is package ‘trajectories’ version ‘0.2-3’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘taxidata’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘trajectories’ can be installed ... [18s/23s] OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/28s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [64s/78s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/13s] OK
    Running ‘tracks.R’ [10s/12s]
    Comparing ‘tracks.Rout’ to ‘tracks.Rout.save’ ...10,14c10
  < Please note that rgdal will be retired by the end of 2023,
  < plan transition to sf/stars/terra functions using GDAL and PROJ
  < at your earliest convenience.
  <
  < rgdal: version: 1.5-31, (SVN revision 1171)
  ---
  > rgdal: version: 1.3-3, (SVN revision 759)
  16,17c12,13
  < Loaded GDAL runtime: GDAL 3.4.2, released 2022/03/08
  < Path to GDAL shared files: /usr/local/share/gdal
  ---
  > Loaded GDAL runtime: GDAL 2.2.3, released 2017/11/20
  > Path to GDAL shared files: /usr/share/gdal/2.2
  19,24c15,17
  < Loaded PROJ runtime: Rel. 7.2.1, January 1st, 2021, [PJ_VERSION: 721]
  < Path to PROJ shared files: /data/gannet/ripley/.local/share/proj:/usr/local/share/proj:/usr/local/share/proj
  < PROJ CDN enabled: FALSE
  < Linking to sp version:1.4-7
  < To mute warnings of possible GDAL/OSR exportToProj4() degradation,
  < use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
  ---
  > Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493]
  > Path to PROJ.4 shared files: (autodetected)
  > Linking to sp version: 1.3-1
  41c34
  < > crs = CRS("+proj=longlat +datum=WGS84")
  ---
  > > crs = CRS("+proj=longlat +ellps=WGS84")
  171c164
  < > # stopifnot(all(sapply(all, function(x) proj4string(x) == "+proj=longlat +ellps=WGS84")))
  ---
  > > stopifnot(all(sapply(all, function(x) proj4string(x) == "+proj=longlat +ellps=WGS84")))
  569,576c562,565
  < 1: In .local(x, i, j = j, ..., value) :
  < replacing distance in connections slot
  < 2: In .local(x, i, j = j, ..., value) :
  < replacing distance in connections slot
  < 3: In .local(x, i, j = j, ..., value) :
  < replacing distance in connections slot
  < 4: In .local(x, i, j = j, ..., value) :
  < replacing distance in connections slot
  ---
  > 1: In .local(x, i, j, ..., value) : replacing distance in connections slot
  > 2: In .local(x, i, j, ..., value) : replacing distance in connections slot
  > 3: In .local(x, i, j, ..., value) : replacing distance in connections slot
  > 4: In .local(x, i, j, ..., value) : replacing distance in connections slot
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [26s/35s] OK
• checking PDF version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE