• using R Under development (unstable) (2024-10-10 r87221)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (GCC) 14.2.0     GNU Fortran (GCC) 14.2.0
• running under: Fedora Linux 36 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘timeEL/DESCRIPTION’ ... OK
• this is package ‘timeEL’ version ‘0.9.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘timeEL’ can be installed ... [8s/10s] OK See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/25s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [152s/154s] ERROR   Running ‘testthat.R’ [152s/153s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(timeEL)   >   > test_check("timeEL")   [ FAIL 2 | WARN 0 | SKIP 0 | PASS 29 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-KMwithSE.R:32:5'): Check the internal Greenwood variance computation of KM against that of prodlim ──   Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects   Backtrace:        ▆     1. └─prodlim::SimSurv(3000) at test-KMwithSE.R:32:5     2. └─prodlim::survModel()     3. └─lava::lvm(~eventtime + censtime)     4. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)     5. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)     6. └─lava::procformula(object, value, ...)     7. ├─lava::`exogenous<-`(...)     8. └─lava:::`exogenous<-.lvm`(...)     9. └─lava::reindex(x)    10. └─lava:::mat.lvm(x, res)    11. └─base::cbind(idxM, pidxM)   ── Error ('test-KaplanMeier.R:89:5'): Compare to km.ci results ─────────────────   Error in `cbind(idxM, pidxM)`: cannot get data pointer of 'NULL' objects   Backtrace:        ▆     1. └─prodlim::SimSurv(50) at test-KaplanMeier.R:89:5     2. └─prodlim::survModel()     3. └─lava::lvm(~eventtime + censtime)     4. ├─lava::`regression<-`(`*tmp*`, messages = messages, value = myvar)     5. └─lava:::`regression<-.lvm`(`*tmp*`, messages = messages, value = myvar)     6. └─lava::procformula(object, value, ...)     7. ├─lava::`exogenous<-`(...)     8. └─lava:::`exogenous<-.lvm`(...)     9. └─lava::reindex(x)    10. └─lava:::mat.lvm(x, res)    11. └─base::cbind(idxM, pidxM)      [ FAIL 2 | WARN 0 | SKIP 0 | PASS 29 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR