* installing *source* package ‘tidylda’ ...
** this is package ‘tidylda’ version ‘0.1.1’
** package ‘tidylda’ successfully unpacked and MD5 sums checked
** using staged installation
configure: libatomic is available; adding -latomic
** libs
using C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/tidylda/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-dev/RcppProgress/include' -I'/data/localhost/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-dev/RcppProgress/include' -I'/data/localhost/ripley/R/test-dev/RcppThread/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I'/data/localhost/ripley/R/test-dev/RcppProgress/include' -I'/data/localhost/ripley/R/test-dev/RcppThread/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD=1 -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c warp_lda.cpp -o warp_lda.o
In file included from warp_lda.cpp:70:
matrix_conversions.h: In function ‘Rcpp::NumericMatrix vec_to_mat(const std::vector<std::vector<double> >&, const bool&)’:
matrix_conversions.h:82:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   82 |   for (auto j = 0; j < n_cols; j++) {
      |                    ~~^~~~~~~~
matrix_conversions.h:83:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   83 |     for (auto k = 0; k < n_rows; k++) {
      |                      ~~^~~~~~~~
matrix_conversions.h: In function ‘Rcpp::IntegerMatrix vec_to_mat(const std::vector<std::vector<long int> >&, const bool&)’:
matrix_conversions.h:106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  106 |   for (auto j = 0; j < n_cols; j++) {
      |                    ~~^~~~~~~~
matrix_conversions.h:107:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  107 |     for (auto k = 0; k < n_rows; k++) {
      |                      ~~^~~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o tidylda.so RcppExports.o init.o warp_lda.o -fopenmp -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -latomic
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/tidylda/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/tidylda/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/tidylda/src'
installing to /data/localhost/ripley/R/packages/tests-devel/tidylda.Rcheck/00LOCK-tidylda/00new/tidylda/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidylda)