Install log for 'tfarima'

* installing *source* package ‘tfarima’ ...
** this is package ‘tfarima’ version ‘0.4.1’
** package ‘tfarima’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/tfarima/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c acovtoma.cpp -o acovtoma.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c decomp.cpp -o decomp.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c diff.cpp -o diff.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c filter.cpp -o filter.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c forecast.cpp -o forecast.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gls.cpp -o gls.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c loglik.cpp -o loglik.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c outliers.cpp -o outliers.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c pol.cpp -o pol.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c presample.cpp -o presample.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c res.cpp -o res.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sim.cpp -o sim.o
presample.cpp: In function ‘arma::mat presampleCovC(const arma::colvec&, const arma::colvec&, bool)’:
presample.cpp:10:23: warning: unused variable ‘t’ [-Wunused-variable]
   10 |   int p, q, pq, r, s, t, i, j, k, h;
      |                       ^
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c spec.cpp -o spec.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c stsm.cpp -o stsm.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c tacov.cpp -o tacov.o
stsm.cpp: In function ‘arma::colvec resrfC(const arma::colvec&, const arma::colvec&, const arma::rowvec&, const arma::mat&, const arma::mat&, arma::colvec&, bool)’:
stsm.cpp:311:21: warning: unused variable ‘ll’ [-Wunused-variable]
  311 |   double sum, detL, ll, g0;
      |                     ^~
stsm.cpp: In function ‘bool kf0C(const arma::colvec&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::mat&, arma::colvec&, arma::colvec&)’:
stsm.cpp:443:16: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  443 |   if (v.n_elem < n) return false;
      |       ~~~~~~~~~^~~
stsm.cpp:439:7: warning: unused variable ‘i’ [-Wunused-variable]
  439 |   int i, j, k, n, t;
      |       ^
stsm.cpp:439:10: warning: unused variable ‘j’ [-Wunused-variable]
  439 |   int i, j, k, n, t;
      |          ^
stsm.cpp:440:10: warning: unused variable ‘sum’ [-Wunused-variable]
  440 |   double sum, s11;
      |          ^~~
stsm.cpp: In function ‘bool kfC(const arma::colvec&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::colvec&, const arma::mat&, arma::colvec&, arma::colvec&, arma::mat&, arma::mat&, bool)’:
stsm.cpp:473:16: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  473 |   if (v.n_elem < n || b.n_elem != k || C.n_rows != C.n_cols) return false;
      |       ~~~~~~~~~^~~
stsm.cpp:473:32: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  473 |   if (v.n_elem < n || b.n_elem != k || C.n_rows != C.n_cols) return false;
      |                       ~~~~~~~~~^~~~
stsm.cpp:474:40: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  474 |   if (S.n_rows != S.n_cols || S.n_rows != k + 1) return false;
      |                               ~~~~~~~~~^~~~~~~~
stsm.cpp:475:17: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  475 |   if (x0.n_elem != k || P0.n_rows != k || P0.n_rows != P0.n_cols) return false;
      |       ~~~~~~~~~~^~~~
stsm.cpp:475:35: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  475 |   if (x0.n_elem != k || P0.n_rows != k || P0.n_rows != P0.n_cols) return false;
      |                         ~~~~~~~~~~^~~~
stsm.cpp:469:7: warning: unused variable ‘i’ [-Wunused-variable]
  469 |   int i, j, k, n, t;
      |       ^
stsm.cpp:469:10: warning: unused variable ‘j’ [-Wunused-variable]
  469 |   int i, j, k, n, t;
      |          ^
stsm.cpp:470:10: warning: unused variable ‘sum’ [-Wunused-variable]
  470 |   double sum, s11;
      |          ^~~
stsm.cpp: In function ‘bool ksC(const arma::colvec&, const arma::colvec&, const arma::mat&, const arma::mat&, arma::colvec&, arma::mat&, arma::mat&, arma::mat&)’:
stsm.cpp:509:7: warning: unused variable ‘i’ [-Wunused-variable]
  509 |   int i, j, k, n, t;
      |       ^
stsm.cpp:509:10: warning: unused variable ‘j’ [-Wunused-variable]
  509 |   int i, j, k, n, t;
      |          ^
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o tfarima.so RcppExports.o acovtoma.o decomp.o diff.o filter.o forecast.o gls.o loglik.o outliers.o pol.o presample.o res.o sim.o spec.o stsm.o tacov.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/tfarima/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/tfarima/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/tfarima/src'
installing to /data/gannet/ripley/R/packages/tests-devel/tfarima.Rcheck/00LOCK-tfarima/00new/tfarima/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tfarima)