• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘textplot/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘textplot’ version ‘0.2.2’
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘ggalt’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘textplot’ can be installed ... [11s/17s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/25s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Unknown package ‘ggalt’ in Rd xrefs
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... ERROR Running examples in ‘textplot-Ex.R’ failed The error most likely occurred in: > ### Name: plot.BTM > ### Title: Plot function for a BTM object > ### Aliases: plot.BTM > > ### ** Examples > > ## Don't show: > if(require(igraph) && require(BTM) && require(ggraph) && + require(ggforce) && require(concaveman) && + require(data.table) && require(udpipe)) + { + ## End(Don't show) + library(igraph) + library(BTM) + library(ggraph) + library(ggforce) + library(concaveman) + data(example_btm, package = 'textplot') + + model <- example_btm + + topiclabels <- c("Garbage", + "Data Mining", "Gradient descent", "API's", + "Random Forests", "Stat models", "Text Mining / NLP", + "GLM / GAM / Bayesian", "Machine learning", "Variable selection", + "Regularisation techniques", "Optimisation", "Fuzzy logic", + "Classification/Regression trees", "Text frequencies", + "Neural / Deep learning", "Variable selection", + "Text file handling", "Text matching", "Topic modelling") + plot(model, title = "Biterm topic model", subtitle = "some topics", + top_n = 7, + which = c(3, 4, 5, 6, 7, 9, 12, 16, 20), + labels = topiclabels) + + + ## Don't show: + } Loading required package: igraph Attaching package: ‘igraph’ The following objects are masked from ‘package:stats’:     decompose, spectrum The following object is masked from ‘package:base’:     union Loading required package: BTM Loading required package: ggraph Loading required package: ggplot2 Loading required package: ggforce Loading required package: concaveman Loading required package: data.table Attaching package: ‘data.table’ The following object is masked from ‘package:base’:     %notin% Loading required package: udpipe Error in `[.data.table`(biterms, , `:=`(topic_freq, .N), by = list(term1, :   attempt access index 3/3 in VECTOR_ELT Calls: plot ... textplot_bitermclusters.default -> [ -> [.data.table Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [24s/41s] ERROR Error(s) in re-building vignettes: --- re-building ‘textplot-examples.Rnw’ using knitr Attaching package: 'igraph' The following objects are masked from 'package:stats':     decompose, spectrum The following object is masked from 'package:base':     union trying URL 'https://raw.githubusercontent.com/jwijffels/udpipe.models.ud.2.5/master/inst/udpipe-ud-2.5-191206/english-ewt-ud-2.5-191206.udpipe' Content type 'application/octet-stream' length 16309608 bytes (15.6 MB) ================================================== downloaded 15.6 MB Quitting from textplot-examples.Rnw:52-62 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 5/5 in VECTOR_ELT --- Backtrace:     x  1. +-udpipe::udpipe(...)  2. \-udpipe:::udpipe.character(...)  3. +-base::as.data.frame(x, detailed = TRUE)  4. \-udpipe:::as.data.frame.udpipe_connlu(x, detailed = TRUE)  5. \-udpipe:::read_connlu(x, is_udpipe_annotation = TRUE, ...)  6. +-out[, `:=`(paragraph_id, cumsum(is_newparagraph)), by = list(doc_id)]  7. \-data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'textplot-examples.Rnw' failed with diagnostics: attempt access index 5/5 in VECTOR_ELT --- failed re-building ‘textplot-examples.Rnw’ SUMMARY: processing the following file failed:   ‘textplot-examples.Rnw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/11s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs, 1 NOTE