Install log for 'targeted'

* installing *source* package ‘targeted’ ...
** this is package ‘targeted’ version ‘0.6’
** package ‘targeted’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/targeted/src'
rm -f RcppExports.o nb_interface.o ode_interface.o riskreg_interface.o utils_interface.o target/src/dykstra.o target/src/glm.o target/src/mlogit.o target/src/nb.o target/src/nondom.o target/src/odesolver.o target/src/pava.o target/src/target.o target/src/utils.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c nb_interface.cpp -o nb_interface.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ode_interface.cpp -o ode_interface.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c riskreg_interface.cpp -o riskreg_interface.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils_interface.cpp -o utils_interface.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/dykstra.cpp -o target/src/dykstra.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/glm.cpp -o target/src/glm.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/mlogit.cpp -o target/src/mlogit.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/nb.cpp -o target/src/nb.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/nondom.cpp -o target/src/nondom.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/odesolver.cpp -o target/src/odesolver.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/pava.cpp -o target/src/pava.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/target.cpp -o target/src/target.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_R -I. -Itarget/include -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c target/src/utils.cpp -o target/src/utils.o
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:685,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32,
                 from target/include/target/glm.hpp:17,
                 from target/include/target/target.hpp:11,
                 from target/src/target.cpp:14:
In static member function ‘static eT arma::arrayops::accumulate(const eT*, arma::uword) [with eT = double]’,
    inlined from ‘static typename T1::elem_type arma::op_accu_mat::apply(const T1&) [with T1 = arma::mtOp<double, arma::Col<std::complex<double> >, arma::op_real>]’ at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/op_accu_meat.hpp:121:32,
    inlined from ‘auto arma::accu(const T1&, const typename enable_if<is_arma_type<T1>::value>::result*) [with T1 = mtOp<double, Col<std::complex<double> >, op_real>]’ at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_accu.hpp:34:28,
    inlined from ‘typename arma::enable_if2<(arma::is_arma_type<T1>::value && arma::resolves_to_vector<T1>::yes), typename T1::elem_type>::result arma::sum(const T1&) [with T1 = mtOp<double, Col<std::complex<double> >, op_real>]’ at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/fn_sum.hpp:31:14,
    inlined from ‘arma::mat target::ACE::deriv(const cx_dbl&)’ at target/src/target.cpp:431:18:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/arrayops_meat.hpp:941:12: warning: ‘U.arma::quasi_unwrap<arma::mtOp<double, arma::Col<std::complex<double> >, arma::op_real> >::M.arma::Mat<double>::mem_local[0]’ may be used uninitialized [-Wmaybe-uninitialized]
  941 |       acc1 += (*src);
      |       ~~~~~^~~~~~~~~
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:801:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/op_accu_meat.hpp: In member function ‘arma::mat target::ACE::deriv(const cx_dbl&)’:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/op_accu_meat.hpp:119:28: note: ‘U’ declared here
  119 |     const quasi_unwrap<T1> U(X);
      |                            ^
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o targeted.so RcppExports.o nb_interface.o ode_interface.o riskreg_interface.o utils_interface.o target/src/dykstra.o target/src/glm.o target/src/mlogit.o target/src/nb.o target/src/nondom.o target/src/odesolver.o target/src/pava.o target/src/target.o target/src/utils.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/targeted/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/targeted/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/targeted/src'
installing to /data/gannet/ripley/R/packages/tests-devel/targeted.Rcheck/00LOCK-targeted/00new/targeted/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (targeted)