* installing *source* package ‘svd’ ...
** package ‘svd’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/svd/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c extmat.c -o extmat.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c svd_init.c -o svd_init.o
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c propack/dlansvd_irl.f -o propack/dlansvd_irl.o
propack/dlansvd_irl.f:115:18:
115 | character*1 which,jobu,jobv
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:432:18:
432 | character*1 which,jobu,jobv
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1282:18:
1282 | character*1 jobu,jobv
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1360:18:
1360 | character*1 jobq
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1508:18:
1508 | character*1 transa
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1593:18:
1593 | character*1 transa
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1644:18:
1644 | character*1 transb
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1970:18:
1970 | character*1 which,jobu,jobv
| 1
Warning: Obsolescent feature: Old-style character length at (1)
propack/dlansvd_irl.f:1912:57:
1912 | subroutine dritzvec(which,jobu,jobv,m,n,k,dim,D,E,S,U,ldu,
| 1
Warning: Unused dummy argument 's' at (1) [-Wunused-dummy-argument]
propack/dlansvd_irl.f:433:45:
433 | integer m,n,p,neig,maxiter,ldu,ldv,iter,liwork,dim
| 1
Warning: Unused variable 'iter' declared at (1) [-Wunused-variable]
propack/dlansvd_irl.f:432:28:
432 | character*1 which,jobu,jobv
| 1
Warning: Unused variable 'jobu' declared at (1) [-Wunused-variable]
propack/dlansvd_irl.f:432:33:
432 | character*1 which,jobu,jobv
| 1
Warning: Unused variable 'jobv' declared at (1) [-Wunused-variable]
propack/dlansvd_irl.f:432:23:
432 | character*1 which,jobu,jobv
| 1
Warning: Unused variable 'which' declared at (1) [-Wunused-variable]
gfortran-13 -fpic -g -O2 -mtune=native -Wall -pedantic -c propack/printstat.f90 -o propack/printstat.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c propack/propack_svd.c -o propack/propack_svd.o
propack/propack_svd.c: In function 'printint0':
propack/propack_svd.c:61:7: warning: unused variable 'i' [-Wunused-variable]
61 | int i;
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/dsort2.c -o trlan/dsort2.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/dstqrb.c -o trlan/dstqrb.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/trlcore.c -o trlan/trlcore.o
trlan/trlcore.c: In function 'trlanczos':
trlan/trlcore.c:246:5: warning: variable 'count' set but not used [-Wunused-but-set-variable]
246 | count;
| ^~~~~
trlan/trlcore.c: In function 'trl_initial_guess':
trlan/trlcore.c:972:22: warning: variable 'north' set but not used [-Wunused-but-set-variable]
972 | int i, j, k, nran, north;
| ^~~~~
trlan/trlcore.c: In function 'trl_orth':
trlan/trlcore.c:1095:32: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
1095 | int i, usecgs, jnd, jm1, no, nr;
| ^~
trlan/trlcore.c:1095:28: warning: variable 'no' set but not used [-Wunused-but-set-variable]
1095 | int i, usecgs, jnd, jm1, no, nr;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/trlaux.c -o trlan/trlaux.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/trlan.c -o trlan/trlan.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/trl_comm_none.c -o trlan/trl_comm_none.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/trlmap.c -o trlan/trlmap.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/restart.c -o trlan/restart.o
trlan/restart.c: In function 'trl_restart_max_gap_cost_ratio':
trlan/restart.c:348:62: warning: variable 'min_ratio' set but not used [-Wunused-but-set-variable]
348 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^~~~~~~~~
trlan/restart.c:346:32: warning: variable 'mn1' set but not used [-Wunused-but-set-variable]
346 | int i, j, k, nd, l1, l2, mn, mn1, mn2, t, k1, k2,
| ^~~
trlan/restart.c: In function 'trl_restart_max_gap_cost_ratio_static':
trlan/restart.c:534:62: warning: variable 'min_ratio' set but not used [-Wunused-but-set-variable]
534 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^~~~~~~~~
trlan/restart.c:534:50: warning: variable 'min_gamma0' set but not used [-Wunused-but-set-variable]
534 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^~~~~~~~~~
trlan/restart.c:534:39: warning: variable 'min_gamma' set but not used [-Wunused-but-set-variable]
534 | double gamma0, gamma, val, min_val, min_gamma, min_gamma0, min_ratio,
| ^~~~~~~~~
trlan/restart.c:533:28: warning: variable 'min_l' set but not used [-Wunused-but-set-variable]
533 | min_k1, min_k2, min_m, min_l;
| ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/ztrl_comm_none.c -o trlan/ztrl_comm_none.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/ztrlan.c -o trlan/ztrlan.o
trlan/ztrlan.c: In function 'ztrl_check_ritz':
trlan/ztrlan.c:283:9: warning: unused variable 'fp' [-Wunused-variable]
283 | FILE *fp;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/ztrlcore.c -o trlan/ztrlcore.o
trlan/ztrlcore.c: In function 'ztrlanczos':
trlan/ztrlcore.c:565:15: warning: variable 'count' set but not used [-Wunused-but-set-variable]
565 | ldrr, count;
| ^~~~~
trlan/ztrlcore.c:1269:9: warning: 'rr' may be used uninitialized [-Wmaybe-uninitialized]
1269 | zlog_error_state(info, kept, j1, j2, jnd, nrow, mev, eval, alpha,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1270 | alfrot, beta, betrot, evec, base, qa, qb, rr,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1271 | title, iwrk);
| ~~~~~~~~~~~~
trlan/ztrlcore.c:571:19: note: 'rr' was declared here
571 | trl_dcomplex *rr, *qa, *qb, *base, *yy2;
| ^~
trlan/ztrlcore.c:1269:9: warning: 'qa' may be used uninitialized [-Wmaybe-uninitialized]
1269 | zlog_error_state(info, kept, j1, j2, jnd, nrow, mev, eval, alpha,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1270 | alfrot, beta, betrot, evec, base, qa, qb, rr,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1271 | title, iwrk);
| ~~~~~~~~~~~~
trlan/ztrlcore.c:571:24: note: 'qa' was declared here
571 | trl_dcomplex *rr, *qa, *qb, *base, *yy2;
| ^~
trlan/ztrlcore.c:1269:9: warning: 'qb' may be used uninitialized [-Wmaybe-uninitialized]
1269 | zlog_error_state(info, kept, j1, j2, jnd, nrow, mev, eval, alpha,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1270 | alfrot, beta, betrot, evec, base, qa, qb, rr,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1271 | title, iwrk);
| ~~~~~~~~~~~~
trlan/ztrlcore.c:571:29: note: 'qb' was declared here
571 | trl_dcomplex *rr, *qa, *qb, *base, *yy2;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/ztrlaux.c -o trlan/ztrlaux.o
trlan/ztrlaux.c: In function 'ztrl_check_recurrence':
trlan/ztrlaux.c:583:9: warning: 'aq' may be used uninitialized [-Wmaybe-uninitialized]
583 | op(&nrow, &i__1, &v2[i * ld2], &ld2, aq, &nrow, lparam);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trlan/ztrlaux.c:510:19: note: 'aq' was declared here
510 | trl_dcomplex *aq, *qkp1, *cs, *alf, *bet;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/zdaxpy.c -o trlan/zdaxpy.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/zdgemv.c -o trlan/zdgemv.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/trlan_R.c -o trlan/trlan_R.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -I../inst/include -DUSE_FC_LEN_T -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c trlan/ztrlan_R.c -o trlan/ztrlan_R.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o svd.so extmat.o svd_init.o propack/dlansvd_irl.o propack/printstat.o propack/propack_svd.o trlan/dsort2.o trlan/dstqrb.o trlan/trlcore.o trlan/trlaux.o trlan/trlan.o trlan/trl_comm_none.o trlan/trlmap.o trlan/restart.o trlan/ztrl_comm_none.o trlan/ztrlan.o trlan/ztrlcore.o trlan/ztrlaux.o trlan/zdaxpy.o trlan/zdgemv.o trlan/trlan_R.o trlan/ztrlan_R.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/svd/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/svd/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/svd/src'
installing to /data/gannet/ripley/R/packages/tests-devel/svd.Rcheck/00LOCK-svd/00new/svd/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (svd)