- using R Under development (unstable) (2024-10-10 r87221)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
- running under: Fedora Linux 36 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘stopdetection/DESCRIPTION’ ... OK
- this is package ‘stopdetection’ version ‘0.1.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘stopdetection’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(stopdetection)
>
> test_check("stopdetection")
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: matrix(.Call("R_haversine_seq_vec", x, y))
2: geodist_seq_vec(x1, y1, measure, pad)
3: geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine")
4: `[.data.table`(res, (move_idx), `:=`(raw_travel_dist, sum(geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine"))), move_id)
5: res[(move_idx), `:=`(raw_travel_dist, sum(geodist_vec(longitude, latitude, sequential = TRUE, measure = "haversine"))), move_id]
6: returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000, thetaT = 200))
7: eval_bare(expr, quo_get_env(quo))
8: quasi_label(enquo(object), label, arg = "object")
9: testthat::expect_equal(returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000, thetaT = 200))$state_id, 1)
10: eval(code, test_env)
11: eval(code, test_env)
12: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
13: doTryCatch(return(expr), name, parentenv, handler)
14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
16: doTryCatch(return(expr), name, parentenv, handler)
17: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
18: tryCatchList(expr, classes, parentenv, handlers)
19: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
20: test_code(desc, code, env = parent.frame(), default_reporter = local_interactive_reporter())
21: test_that("events are returned when there are no moves", { testthat::expect_equal(returnStateEvents(stopFinder(data.table::copy(df), thetaD = 1000, thetaT = 200))$state_id, 1)})
22: eval(code, test_env)
23: eval(code, test_env)
24: withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error)
25: doTryCatch(return(expr), name, parentenv, handler)
26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
27: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
28: doTryCatch(return(expr), name, parentenv, handler)
29: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
30: tryCatchList(expr, classes, parentenv, handlers)
31: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled && !is.null(test)) { skip_empty() }}, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error), error = handle_fatal, skip = function(e) { })
32: test_code(test = NULL, code = exprs, env = env, default_reporter = StopReporter$new())
33: source_file(path, env = env(env), desc = desc, error_call = error_call)
34: FUN(X[[i]], ...)
35: lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call)
36: doTryCatch(return(expr), name, parentenv, handler)
37: tryCatchOne(expr, names, parentenv, handlers[[1L]])
38: tryCatchList(expr, classes, parentenv, handlers)
39: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
40: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, error_call = error_call))
41: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, error_call = error_call)
42: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel)
43: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
44: test_check("stopdetection")
An irrecoverable exception occurred. R is aborting now ...
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [20s/30s] OK
- checking PDF version of manual ... [7s/13s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR