* installing *source* package ‘squat’ ...
** package ‘squat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/squat/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
In file included from ../inst/include/squat_RcppExports.h:7,
                 from ../inst/include/squat.h:7,
                 from RcppExports.cpp:4:
../inst/include/squat_types.h:2: warning: "NDEBUG" redefined
    2 | #define NDEBUG
      | 
<command-line>: note: this is the location of the previous definition
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c kma.cpp -o kma.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c meanCenterClass.cpp -o meanCenterClass.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c squatQTSClass.cpp -o squatQTSClass.o
squatQTSClass.cpp: In function 'Rcpp::DataFrame resample_qts_impl(const Rcpp::DataFrame&, double, double, unsigned int)':
squatQTSClass.cpp:254:10: warning: unused variable 'epsValue' [-Wunused-variable]
  254 |   double epsValue = std::sqrt(std::numeric_limits<double>::epsilon());
      |          ^~~~~~~~
squatQTSClass.cpp: In function 'Rcpp::DataFrame moving_average_qts_impl(const Rcpp::DataFrame&, unsigned int)':
squatQTSClass.cpp:405:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  405 |   for (int i = 0;i < nGrid;++i)
      |                  ~~^~~~~~~
squatQTSClass.cpp: In function 'Rcpp::DataFrame multiply_qts_impl(const Rcpp::DataFrame&, const Rcpp::DataFrame&)':
squatQTSClass.cpp:442:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  442 |   if (qts_right.nrows() != nGrid)
      |       ~~~~~~~~~~~~~~~~~~^~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c squatQTSDistanceUtils.cpp -o squatQTSDistanceUtils.o
squatQTSClass.cpp: In function 'Rcpp::DataFrame resample_qts_impl(const Rcpp::DataFrame&, double, double, unsigned int)':
squatQTSClass.cpp:307:7: warning: 'xinf' may be used uninitialized [-Wmaybe-uninitialized]
  307 |       if (xsup > xinf)
      |       ^~
squatQTSClass.cpp:221:10: note: 'xinf' was declared here
  221 |   double xinf, xsup;
      |          ^~~~
squatQTSClass.cpp:307:7: warning: 'xsup' may be used uninitialized [-Wmaybe-uninitialized]
  307 |       if (xsup > xinf)
      |       ^~
squatQTSClass.cpp:221:16: note: 'xsup' was declared here
  221 |   double xinf, xsup;
      |                ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c squatQTSSampleClass.cpp -o squatQTSSampleClass.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c squatQTSTransformations.cpp -o squatQTSTransformations.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/fdacluster/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c squatSO3Utils.cpp -o squatSO3Utils.o
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o squat.so RcppExports.o kma.o meanCenterClass.o squatQTSClass.o squatQTSDistanceUtils.o squatQTSSampleClass.o squatQTSTransformations.o squatSO3Utils.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/squat/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/squat/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/squat/src'
installing to /data/gannet/ripley/R/packages/tests-devel/squat.Rcheck/00LOCK-squat/00new/squat/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (squat)