* installing *source* package ‘sparta’ ...
** package ‘sparta’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240503 (prerelease)’
using C++11
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparta/src'
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c converters.cpp -o converters.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c marginalize.cpp -o marginalize.o
converters.cpp: In function 'Rcpp::List as_cpt_(arma::Mat<short int>&, vec_dbl&, vec_str&, vec_str&)':
converters.cpp:50:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
50 | for (int i = 0; i < y.size(); i++) {
| ~~^~~~~~~~~~
marginalize.cpp: In function 'Rcpp::List marginalize_sum_(arma::Mat<short int>&, vec_dbl&, vec_str, vec_str)':
marginalize.cpp:49:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
49 | for (int k = 0; k < v.size(); k++) {
| ~~^~~~~~~~~~
marginalize.cpp:17:7: warning: unused variable 'n_col_x' [-Wunused-variable]
17 | int n_col_x = xval.size();
| ^~~~~~~
marginalize.cpp: In function 'Rcpp::List marginalize_sum_2(arma::Mat<short int>&, vec_dbl&, vec_str, vec_str)':
marginalize.cpp:73:7: warning: unused variable 'n_col_x' [-Wunused-variable]
73 | int n_col_x = xval.size();
| ^~~~~~~
marginalize.cpp: In function 'Rcpp::List marginalize_max_(arma::Mat<short int>&, vec_dbl&, vec_str, vec_str)':
marginalize.cpp:161:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
161 | for (int k = 0; k < v.size(); k++) {
| ~~^~~~~~~~~~
marginalize.cpp:131:7: warning: unused variable 'n_col_x' [-Wunused-variable]
131 | int n_col_x = xval.size();
| ^~~~~~~
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c merge.cpp -o merge.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c misc_utils.cpp -o misc_utils.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c set_ops.cpp -o set_ops.o
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c slice.cpp -o slice.o
merge.cpp: In function 'Rcpp::List merge_disjoint_(arma::Mat<short int>&, arma::Mat<short int>&, vec_dbl&, vec_dbl&, vec_str, vec_str, std::string)':
merge.cpp:27:29: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
27 | for (std::size_t i = 0; i < n_col_x; i++) {
| ~~^~~~~~~~~
merge.cpp:28:31: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
28 | for (std::size_t j = 0; j < n_col_y; j++) {
| ~~^~~~~~~~~
merge.cpp: In function 'Rcpp::List merge_(arma::Mat<short int>&, arma::Mat<short int>&, vec_dbl&, vec_dbl&, vec_str, vec_str, std::string)':
merge.cpp:80:7: warning: unused variable 'n_yvar' [-Wunused-variable]
80 | int n_yvar = yvar.size();
| ^~~~~~
misc_utils.cpp: In function 'umap_str_int paste_cols_from_index(arma::Mat<short int>&, arma::uvec&)':
misc_utils.cpp:48:23: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
48 | for (int i = 1; i < sep_idx.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
misc_utils.cpp: In function 'umap_str_pair paste_marg(arma::Mat<short int>&, arma::uvec&, vec_dbl&)':
misc_utils.cpp:60:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare]
60 | for (int i = 0; i < N; i++) {
| ~~^~~
misc_utils.cpp:64:23: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare]
64 | for (int i = 0; i < row_idx.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
g++-14 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c test_xptr.cpp -o test_xptr.o
g++-14 -std=gnu++11 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o sparta.so RcppExports.o converters.o marginalize.o merge.o misc_utils.o set_ops.o slice.o test_xptr.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparta/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparta/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparta/src'
installing to /data/gannet/ripley/R/packages/tests-devel/sparta.Rcheck/00LOCK-sparta/00new/sparta/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sparta)