* installing *source* package ‘sparsediff’ ... ** this is package ‘sparsediff’ version ‘0.4.0’ ** package ‘sparsediff’ successfully unpacked and MD5 sums checked ** using staged installation sparsediff: ccache not found; compiling without it ** libs using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparsediff/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cblas_shim.c -o cblas_shim.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cpp11.cpp -o cpp11.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sparsediff.cpp -o sparsediff.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/expr.c -o sparsediffengine/src/expr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/problem.c -o sparsediffengine/src/problem.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/old-code/linear_op.c -o sparsediffengine/src/old-code/linear_op.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/old-code/old_CSR.c -o sparsediffengine/src/old-code/old_CSR.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/old-code/old_CSR_sum.c -o sparsediffengine/src/old-code/old_CSR_sum.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/old-code/old_permuted_dense.c -o sparsediffengine/src/old-code/old_permuted_dense.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/COO_matrix.c -o sparsediffengine/src/utils/COO_matrix.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/CSC_matrix.c -o sparsediffengine/src/utils/CSC_matrix.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/CSR_matrix.c -o sparsediffengine/src/utils/CSR_matrix.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/CSR_sum.c -o sparsediffengine/src/utils/CSR_sum.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/int_double_pair.c -o sparsediffengine/src/utils/int_double_pair.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/linalg_dense_sparse_matmuls.c -o sparsediffengine/src/utils/linalg_dense_sparse_matmuls.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/linalg_sparse_matmuls.c -o sparsediffengine/src/utils/linalg_sparse_matmuls.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/matrix_BTA.c -o sparsediffengine/src/utils/matrix_BTA.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/matrix_sum.c -o sparsediffengine/src/utils/matrix_sum.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/mini_numpy.c -o sparsediffengine/src/utils/mini_numpy.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/permuted_dense.c -o sparsediffengine/src/utils/permuted_dense.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/sparse_matrix.c -o sparsediffengine/src/utils/sparse_matrix.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/tracked_alloc.c -o sparsediffengine/src/utils/tracked_alloc.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/utils/utils.c -o sparsediffengine/src/utils/utils.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/add.c -o sparsediffengine/src/atoms/affine/add.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/broadcast.c -o sparsediffengine/src/atoms/affine/broadcast.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/convolve.c -o sparsediffengine/src/atoms/affine/convolve.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/diag_mat.c -o sparsediffengine/src/atoms/affine/diag_mat.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/diag_vec.c -o sparsediffengine/src/atoms/affine/diag_vec.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/hstack.c -o sparsediffengine/src/atoms/affine/hstack.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/index.c -o sparsediffengine/src/atoms/affine/index.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/left_matmul.c -o sparsediffengine/src/atoms/affine/left_matmul.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/neg.c -o sparsediffengine/src/atoms/affine/neg.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/parameter.c -o sparsediffengine/src/atoms/affine/parameter.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/promote.c -o sparsediffengine/src/atoms/affine/promote.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/reshape.c -o sparsediffengine/src/atoms/affine/reshape.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/right_matmul.c -o sparsediffengine/src/atoms/affine/right_matmul.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/scalar_mult.c -o sparsediffengine/src/atoms/affine/scalar_mult.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/sum.c -o sparsediffengine/src/atoms/affine/sum.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/trace.c -o sparsediffengine/src/atoms/affine/trace.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/transpose.c -o sparsediffengine/src/atoms/affine/transpose.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/upper_tri.c -o sparsediffengine/src/atoms/affine/upper_tri.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/variable.c -o sparsediffengine/src/atoms/affine/variable.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/vector_mult.c -o sparsediffengine/src/atoms/affine/vector_mult.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/affine/vstack.c -o sparsediffengine/src/atoms/affine/vstack.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/bivariate_full_dom/matmul.c -o sparsediffengine/src/atoms/bivariate_full_dom/matmul.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/bivariate_full_dom/multiply.c -o sparsediffengine/src/atoms/bivariate_full_dom/multiply.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/bivariate_restricted_dom/quad_over_lin.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/quad_over_lin.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_scalar_vector.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_scalar_vector.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_vector_scalar.c -o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_vector_scalar.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/common.c -o sparsediffengine/src/atoms/elementwise_full_dom/common.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/exp.c -o sparsediffengine/src/atoms/elementwise_full_dom/exp.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/hyperbolic.c -o sparsediffengine/src/atoms/elementwise_full_dom/hyperbolic.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/logistic.c -o sparsediffengine/src/atoms/elementwise_full_dom/logistic.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/normal_cdf.c -o sparsediffengine/src/atoms/elementwise_full_dom/normal_cdf.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/power.c -o sparsediffengine/src/atoms/elementwise_full_dom/power.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/trig.c -o sparsediffengine/src/atoms/elementwise_full_dom/trig.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_full_dom/xexp.c -o sparsediffengine/src/atoms/elementwise_full_dom/xexp.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_restricted_dom/atanh.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/atanh.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_restricted_dom/common.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/common.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_restricted_dom/entr.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/entr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_restricted_dom/log.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/log.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/elementwise_restricted_dom/tan.c -o sparsediffengine/src/atoms/elementwise_restricted_dom/tan.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/other/prod.c -o sparsediffengine/src/atoms/other/prod.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/other/prod_axis_one.c -o sparsediffengine/src/atoms/other/prod_axis_one.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/other/prod_axis_zero.c -o sparsediffengine/src/atoms/other/prod_axis_zero.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Isparsediffengine/include -Icblas_compat -DSPARSEDIFF_USE_RBLAS -DSPARSEDIFF_R_PRINT -DDIFF_ENGINE_VERSION='"0.3.0"' -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsediffengine/src/atoms/other/quad_form.c -o sparsediffengine/src/atoms/other/quad_form.o g++ -std=gnu++20 -shared -L/usr/local/lib64 -o sparsediff.so cblas_shim.o cpp11.o sparsediff.o sparsediffengine/src/expr.o sparsediffengine/src/problem.o sparsediffengine/src/old-code/linear_op.o sparsediffengine/src/old-code/old_CSR.o sparsediffengine/src/old-code/old_CSR_sum.o sparsediffengine/src/old-code/old_permuted_dense.o sparsediffengine/src/utils/COO_matrix.o sparsediffengine/src/utils/CSC_matrix.o sparsediffengine/src/utils/CSR_matrix.o sparsediffengine/src/utils/CSR_sum.o sparsediffengine/src/utils/int_double_pair.o sparsediffengine/src/utils/linalg_dense_sparse_matmuls.o sparsediffengine/src/utils/linalg_sparse_matmuls.o sparsediffengine/src/utils/matrix_BTA.o sparsediffengine/src/utils/matrix_sum.o sparsediffengine/src/utils/mini_numpy.o sparsediffengine/src/utils/permuted_dense.o sparsediffengine/src/utils/sparse_matrix.o sparsediffengine/src/utils/tracked_alloc.o sparsediffengine/src/utils/utils.o sparsediffengine/src/atoms/affine/add.o sparsediffengine/src/atoms/affine/broadcast.o sparsediffengine/src/atoms/affine/convolve.o sparsediffengine/src/atoms/affine/diag_mat.o sparsediffengine/src/atoms/affine/diag_vec.o sparsediffengine/src/atoms/affine/hstack.o sparsediffengine/src/atoms/affine/index.o sparsediffengine/src/atoms/affine/left_matmul.o sparsediffengine/src/atoms/affine/neg.o sparsediffengine/src/atoms/affine/parameter.o sparsediffengine/src/atoms/affine/promote.o sparsediffengine/src/atoms/affine/reshape.o sparsediffengine/src/atoms/affine/right_matmul.o sparsediffengine/src/atoms/affine/scalar_mult.o sparsediffengine/src/atoms/affine/sum.o sparsediffengine/src/atoms/affine/trace.o sparsediffengine/src/atoms/affine/transpose.o sparsediffengine/src/atoms/affine/upper_tri.o sparsediffengine/src/atoms/affine/variable.o sparsediffengine/src/atoms/affine/vector_mult.o sparsediffengine/src/atoms/affine/vstack.o sparsediffengine/src/atoms/bivariate_full_dom/matmul.o sparsediffengine/src/atoms/bivariate_full_dom/multiply.o sparsediffengine/src/atoms/bivariate_restricted_dom/quad_over_lin.o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr.o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_scalar_vector.o sparsediffengine/src/atoms/bivariate_restricted_dom/rel_entr_vector_scalar.o sparsediffengine/src/atoms/elementwise_full_dom/common.o sparsediffengine/src/atoms/elementwise_full_dom/exp.o sparsediffengine/src/atoms/elementwise_full_dom/hyperbolic.o sparsediffengine/src/atoms/elementwise_full_dom/logistic.o sparsediffengine/src/atoms/elementwise_full_dom/normal_cdf.o sparsediffengine/src/atoms/elementwise_full_dom/power.o sparsediffengine/src/atoms/elementwise_full_dom/trig.o sparsediffengine/src/atoms/elementwise_full_dom/xexp.o sparsediffengine/src/atoms/elementwise_restricted_dom/atanh.o sparsediffengine/src/atoms/elementwise_restricted_dom/common.o sparsediffengine/src/atoms/elementwise_restricted_dom/entr.o sparsediffengine/src/atoms/elementwise_restricted_dom/log.o sparsediffengine/src/atoms/elementwise_restricted_dom/tan.o sparsediffengine/src/atoms/other/prod.o sparsediffengine/src/atoms/other/prod_axis_one.o sparsediffengine/src/atoms/other/prod_axis_zero.o sparsediffengine/src/atoms/other/quad_form.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lm make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparsediff/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparsediff/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparsediff/src' installing to /data/gannet/ripley/R/packages/tests-devel/sparsediff.Rcheck/00LOCK-sparsediff/00new/sparsediff/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparsediff)