* installing *source* package ‘sparseVCBART’ ... ** this is package ‘sparseVCBART’ version ‘1.0.0’ ** package ‘sparseVCBART’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparseVCBART/src' g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c funs.cpp -o funs.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c predict_vcbart.cpp -o predict_vcbart.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rescale_beta.cpp -o rescale_beta.o funs.cpp: In function ‘void fit_ensemble(std::vector&, std::vector&, data_info&)’: funs.cpp:51:17: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 51 | if(fit.size() != di.N) Rcpp::stop("[fit_ensemble]: size of fit must be equal to di.N!"); // honestly should never get triggered | ~~~~~~~~~~~^~~~~~~ funs.cpp: In function ‘void graph_partition(std::set&, std::set&, std::set&, std::vector&, int&, int&, RNG&)’: funs.cpp:1085:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1085 | for(int comp_ix = 0; comp_ix < components.size(); comp_ix++){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~ funs.cpp:1121:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1121 | for(int e = 0; e < mst_edges.size(); e++){ | ~~^~~~~~~~~~~~~~~~~~ funs.cpp: In function ‘void update_theta_u(std::vector&, double&, std::vector >&, int&, double&, double&, RNG&)’: funs.cpp:1147:19: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1147 | if(theta.size() != R){ | ~~~~~~~~~~~~~^~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rng.cpp -o rng.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tree.cpp -o tree.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c update_trees.cpp -o update_trees.o funs.cpp: In function ‘void compute_suff_stat_grow(suff_stat&, suff_stat&, int&, rule_t&, tree&, data_info&)’: funs.cpp:135:131: warning: ‘zz_cont’ may be used uninitialized [-Wmaybe-uninitialized] 135 | for(rc_it rcit = rule.rc_weight.begin(); rcit != rule.rc_weight.end(); ++rcit) tmp_z += (rcit->second) * zz_cont[rcit->first]; | ^ funs.cpp:64:11: note: ‘zz_cont’ was declared here 64 | double* zz_cont; | ^~~~~~~ funs.cpp:114:52: warning: ‘zz_cat’ may be used uninitialized [-Wmaybe-uninitialized] 114 | l_count = rule.l_vals.count(zz_cat[rule.v_cat]); | ^ funs.cpp:65:8: note: ‘zz_cat’ was declared here 65 | int* zz_cat; | ^~~~~~ g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c vcbart_cs_fit.cpp -o vcbart_cs_fit.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c vcbart_ind_fit.cpp -o vcbart_ind_fit.o g++ -std=gnu++20 -shared -L/usr/local/lib64 -o sparseVCBART.so RcppExports.o funs.o predict_vcbart.o rescale_beta.o rng.o tree.o update_trees.o vcbart_cs_fit.o vcbart_ind_fit.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparseVCBART/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sparseVCBART/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sparseVCBART/src' installing to /data/gannet/ripley/R/packages/tests-devel/sparseVCBART.Rcheck/00LOCK-sparseVCBART/00new/sparseVCBART/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseVCBART)