* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/simr.Rcheck’
* using R Under development (unstable) (2025-07-18 r88429)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘simr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘simr’ version ‘1.0.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘simr’ can be installed ... [17s/23s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/simr-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [30s/40s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [13s/17s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [56s/70s] ERROR
  Running ‘test-all.R’ [55s/69s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
  > if(require(testthat)) {
  + 
  +     test_check("simr")
  + }
  Loading required package: testthat
  Loading required package: simr
  Loading required package: lme4
  Loading required package: Matrix
  
  Attaching package: 'simr'
  
  The following object is masked from 'package:lme4':
  
      getData
  
  The following object is masked from 'package:testthat':
  
      compare
  
  boundary (singular) fit: see help('isSingular')
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 112 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_testLibrary.R:31:5'): tests run ────────────────────────────────
  Error in `glmer(formula = z ~ x + (1 | g), data = dd, family = poisson, 
      REML = FALSE, control = ctrl)`: unused argument (REML = FALSE)
  Backtrace:
       ▆
    1. ├─base::suppressWarnings(doTest(fm3, rcompare(~(1 | g), "pb"))) at test_testLibrary.R:31:5
    2. │ └─base::withCallingHandlers(...)
    3. ├─simr::doTest(fm3, rcompare(~(1 | g), "pb"))
    4. └─simr:::doTest.default(fm3, rcompare(~(1 | g), "pb"))
    5.   └─simr (local) test(object)
    6.     └─simr (local) test(fit1, fit2)
    7.       ├─pbkrtest::PBmodcomp(model1, model2, nsim = getSimrOption("pbnsim"))
    8.       └─pbkrtest:::PBmodcomp.merMod(model1, model2, nsim = getSimrOption("pbnsim"))
    9.         ├─pbkrtest::PBrefdist(...)
   10.         └─pbkrtest:::PBrefdist.merMod(...)
   11.           └─pbkrtest:::do_sampling(largeModel, smallModel, nsim, cl, details)
   12.             ├─base::unlist(...)
   13.             └─parallel::mclapply(...)
   14.               └─base::lapply(X = X, FUN = FUN, ...)
   15.                 └─pbkrtest (local) FUN(X[[i]], ...)
   16.                   └─pbkrtest (local) get_fun(largeModel, smallModel, nsim = nsim.cl)
   17.                     ├─base::unname(...)
   18.                     ├─base::unlist(...)
   19.                     └─base::lapply(...)
   20.                       └─pbkrtest (local) FUN(X[[i]], ...)
   21.                         ├─base::suppressMessages(refit_safe(sm, yyy, ctrl))
   22.                         │ └─base::withCallingHandlers(...)
   23.                         └─pbkrtest (local) refit_safe(sm, yyy, ctrl)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 112 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [76s/100s] OK
* checking PDF version of manual ... [7s/13s] OK
* checking HTML version of manual ... OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR