* installing *source* package ‘simplextree’ ... ** package ‘simplextree’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (GCC) 13.2.0’ using C++11 make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/simplextree/src' g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c UnionFind.cpp -o UnionFind.o In file included from RcppExports.cpp:4: ../inst/include/simplextree.h:168:10: warning: extra ';' [-Wpedantic] 168 | }; | ^ | - In file included from ../inst/include/simplextree.h:252: ../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ';' [-Wpedantic] 159 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ';' [-Wpedantic] 296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ';' [-Wpedantic] 393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ';' [-Wpedantic] 443 | update_simplex(){ return; }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ';' [-Wpedantic] 475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ';' [-Wpedantic] 560 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ';' [-Wpedantic] 647 | update_simplex(){ return; }; | ^ | - g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c discreteR.cpp -o discreteR.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nerve.cpp -o nerve.o g++-13 -std=gnu++11 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c simplextree_module.cpp -o simplextree_module.o In file included from nerve.cpp:5: ../inst/include/simplextree.h:168:10: warning: extra ';' [-Wpedantic] 168 | }; | ^ | - In file included from ../inst/include/simplextree.h:252: ../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ';' [-Wpedantic] 159 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ';' [-Wpedantic] 296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ';' [-Wpedantic] 393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ';' [-Wpedantic] 443 | update_simplex(){ return; }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ';' [-Wpedantic] 475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ';' [-Wpedantic] 560 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ';' [-Wpedantic] 647 | update_simplex(){ return; }; | ^ | - In file included from simplextree_module.cpp:5: ../inst/include/simplextree.h:168:10: warning: extra ';' [-Wpedantic] 168 | }; | ^ | - In file included from ../inst/include/simplextree.h:252: ../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ';' [-Wpedantic] 159 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ';' [-Wpedantic] 296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ';' [-Wpedantic] 393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ';' [-Wpedantic] 443 | update_simplex(){ return; }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ';' [-Wpedantic] 475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ';' [-Wpedantic] 560 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ';' [-Wpedantic] 647 | update_simplex(){ return; }; | ^ | - g++-13 -std=gnu++11 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o simplextree.so RcppExports.o UnionFind.o discreteR.o nerve.o simplextree_module.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/simplextree/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/simplextree/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/simplextree/src' installing to /data/gannet/ripley/R/packages/tests-devel/simplextree.Rcheck/00LOCK-simplextree/00new/simplextree/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simplextree)