* installing *source* package ‘serrsBayes’ ...
** this is package ‘serrsBayes’ version ‘0.5-0’
** package ‘serrsBayes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/serrsBayes/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mixLorentz.cpp -o mixLorentz.o
mixLorentz.cpp:261: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  261 | #pragma omp parallel for
mixLorentz.cpp:439: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  439 | #pragma omp parallel for default(shared) reduction(+:accept)
mixLorentz.cpp: In function ‘Eigen::ArrayXi resampleParticles(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericVector, int, int)’:
mixLorentz.cpp:258:18: warning: unused variable ‘t1’ [-Wunused-variable]
  258 |   struct timeval t1,t2;
      |                  ^~
mixLorentz.cpp:258:21: warning: unused variable ‘t2’ [-Wunused-variable]
  258 |   struct timeval t1,t2;
      |                     ^~
mixLorentz.cpp: In function ‘long int marginalMetropolisUpdate(Eigen::MatrixXd, unsigned int, Eigen::VectorXd, Eigen::VectorXd, Eigen::VectorXd, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Eigen::VectorXd, Rcpp::List)’:
mixLorentz.cpp:472:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  472 |       for (int i=0; i<n; i++)
      |                     ~^~
mixLorentz.cpp:493:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  493 |       for (int i=0; i<n; i++)
      |                     ~^~
mixLorentz.cpp:560:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  560 |         for (int i=0; i<n; i++)
      |                       ~^~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mixVoigt.cpp -o mixVoigt.o
mixVoigt.cpp:358: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  358 | #pragma omp parallel for default(shared) reduction(+:accept)
mixVoigt.cpp: In function ‘long int mhUpdateVoigt(Eigen::MatrixXd, unsigned int, double, Eigen::VectorXd, Eigen::VectorXd, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Eigen::MatrixXd, Rcpp::List)’:
mixVoigt.cpp:408:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  408 |     for (int i=0; i < n-1; i++) {
      |                   ~~^~~~~
mixVoigt.cpp:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  426 |       for (int i=0; i < n; i++) {
      |                     ~~^~~
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/SparseLU:35,
                 from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Sparse:29,
                 from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigenForward.h:29,
                 from /data/localhost/ripley/R/test-dev/RcppEigen/include/RcppEigen.h:25,
                 from mixVoigt.cpp:24:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h: In instantiation of ‘void Eigen::internal::SparseLUImpl<Scalar, StorageIndex>::heap_relax_snode(Eigen::Index, IndexVector&, Eigen::Index, IndexVector&, IndexVector&) [with Scalar = double; StorageIndex = int; Eigen::Index = long int; IndexVector = Eigen::Matrix<int, -1, 1>]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:669:27:   required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::factorize(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<double, 0, int>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<double, 0, int>]’
  669 |     Base::heap_relax_snode(n, m_etree, m_perfv.relax, marker, relax_end);
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:187:7:   required from ‘void Eigen::SparseLU<_MatrixType, _OrderingType>::compute(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<double, 0, int>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<double, 0, int>]’
  187 |       factorize(matrix);
      |       ^~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU.h:166:7:   required from ‘Eigen::SparseLU<_MatrixType, _OrderingType>::SparseLU(const MatrixType&) [with _MatrixType = Eigen::SparseMatrix<double, 0, int>; _OrderingType = Eigen::COLAMDOrdering<int>; MatrixType = Eigen::SparseMatrix<double, 0, int>]’
  166 |       compute(matrix);
      |       ^~~~~~~
mixVoigt.cpp:267:48:   required from here
  267 |   SparseLU < SparseMatrix<double> > g0LU(g0_Cal);
      |                                                ^
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable ‘nsuper_et_post’ set but not used [-Wunused-but-set-variable=]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
      |         ^~~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable ‘nsuper_et’ set but not used [-Wunused-but-set-variable=]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree
      |         ^~~~~~~~~
mixVoigt.cpp:402:22: warning: ‘prExpRate’ may be used uninitialized [-Wmaybe-uninitialized]
  402 |       lLik += sumDexp(Prop_Theta.segment(3*nPK,nPK), prExpRate);
      |               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mixVoigt.cpp:335:10: note: ‘prExpRate’ was declared here
  335 |   double prExpRate;
      |          ^~~~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o serrsBayes.so RcppExports.o mixLorentz.o mixVoigt.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/serrsBayes/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/serrsBayes/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/serrsBayes/src'
installing to /data/localhost/ripley/R/packages/tests-devel/serrsBayes.Rcheck/00LOCK-serrsBayes/00new/serrsBayes/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (serrsBayes)