* installing *source* package ‘secure’ ...
** package ‘secure’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/secure/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -I../inst/include  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c secure_SURR_fit.cpp -o secure_SURR_fit.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c secure_init.c -o secure_init.o
secure_SURR_fit.cpp: In function 'Rcpp::List secure_SURR_Rcpp_ortho(arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, arma::vec, arma::vec, arma::vec, double, int, Rcpp::List)':
secure_SURR_fit.cpp:543:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  543 |     if (svk > 0)
      |     ^~
secure_SURR_fit.cpp:561:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  561 |       if( (i>1) && ((nzcount(uk) > (p*spu)) || (nzcount(vk) > (q*spv)))  ) {break;}
      |       ^~
secure_SURR_fit.cpp: In function 'Rcpp::List secure_SURR_miss_Rcpp(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::vec, arma::vec, arma::vec, arma::vec, double, int, Rcpp::List)':
secure_SURR_fit.cpp:734:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
  734 |     if (svk > 0)
      |     ^~
secure_SURR_fit.cpp:752:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
  752 |       if( (i>1) && ((nzcount(uk) > (p*spu)) || (nzcount(vk) > (q*spv)))  ) {break;}
      |       ^~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o secure.so RcppExports.o secure_SURR_fit.o secure_init.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/secure/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/secure/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/secure/src'
installing to /data/gannet/ripley/R/packages/tests-devel/secure.Rcheck/00LOCK-secure/00new/secure/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (secure)