• using R Under development (unstable) (2025-10-22 r88969)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘secr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘secr’ version ‘5.3.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘secr’ can be installed ... [12m/18m] OK See the install log for details.
• used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [19s/21s] OK
• checking whether the package can be loaded with stated dependencies ... [18s/20s] OK
• checking whether the package can be unloaded cleanly ... [19s/21s] OK
• checking whether the namespace can be loaded with stated dependencies ... [18s/20s] OK
• checking whether the namespace can be unloaded cleanly ... [20s/23s] OK
• checking loading without being on the library search path ... [20s/21s] OK
• checking whether startup messages can be suppressed ... [20s/20s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [231s/237s] OK
• checking Rd files ... NOTE checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 1 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 2 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 3 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 4 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 5 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 6 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 7 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 8 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 9 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 10 has 2) checkRd: (-1) DA.Rd:91-103: Only 3 columns allowed in this table (row 11 has 2) checkRd: (-1) MCgof.Rd:65-69: Only 4 columns allowed in this table (row 1 has 3) checkRd: (-1) MCgof.Rd:65-69: Only 4 columns allowed in this table (row 2 has 3) checkRd: (-1) MCgof.Rd:65-69: Only 4 columns allowed in this table (row 3 has 3) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 1 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 2 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 3 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 4 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 5 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 6 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 7 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 8 has 1) checkRd: (-1) Parallel.Rd:13-23: Only 4 columns allowed in this table (row 9 has 1) checkRd: (-1) Parallel.Rd:27-33: Only 4 columns allowed in this table (row 1 has 1) checkRd: (-1) Parallel.Rd:27-33: Only 4 columns allowed in this table (row 2 has 1) checkRd: (-1) Parallel.Rd:27-33: Only 4 columns allowed in this table (row 3 has 1) checkRd: (-1) Parallel.Rd:27-33: Only 4 columns allowed in this table (row 4 has 1) checkRd: (-1) Parallel.Rd:27-33: Only 4 columns allowed in this table (row 5 has 1) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 1 has 2) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 2 has 2) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 3 has 2) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 4 has 2) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 5 has 2) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 6 has 2) checkRd: (-1) empirical.Rd:119-128: Only 4 columns allowed in this table (row 7 has 2) checkRd: (-1) make.systematic.Rd:101-105: Only 3 columns allowed in this table (row 1 has 2) checkRd: (-1) make.systematic.Rd:101-105: Only 3 columns allowed in this table (row 2 has 2) checkRd: (-1) make.systematic.Rd:101-105: Only 3 columns allowed in this table (row 3 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 1 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 2 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 3 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 4 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 5 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 6 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 7 has 2) checkRd: (-1) secr-deprecated.Rd:64-73: Only 3 columns allowed in this table (row 8 has 2) checkRd: (-1) secr-internal.Rd:39-47: Only 3 columns allowed in this table (row 2 has 2) checkRd: (-1) secr-internal.Rd:39-47: Only 3 columns allowed in this table (row 3 has 2) checkRd: (-1) secr-internal.Rd:39-47: Only 3 columns allowed in this table (row 4 has 2) checkRd: (-1) secr-internal.Rd:39-47: Only 3 columns allowed in this table (row 5 has 2) checkRd: (-1) secr.fit.Rd:126-153: Only 2 columns allowed in this table (row 26 has 1) checkRd: (-1) secrRNG.Rd:50-59: Only 4 columns allowed in this table (row 2 has 3) checkRd: (-1) secrRNG.Rd:50-59: Only 4 columns allowed in this table (row 4 has 3) checkRd: (-1) secrRNG.Rd:50-59: Only 4 columns allowed in this table (row 6 has 3) checkRd: (-1) secrRNG.Rd:50-59: Only 4 columns allowed in this table (row 7 has 3) checkRd: (-1) trap.builder.Rd:92-99: Only 4 columns allowed in this table (row 1 has 2) checkRd: (-1) trap.builder.Rd:92-99: Only 4 columns allowed in this table (row 2 has 2) checkRd: (-1) trap.builder.Rd:92-99: Only 4 columns allowed in this table (row 3 has 2) checkRd: (-1) trap.builder.Rd:92-99: Only 4 columns allowed in this table (row 4 has 2) checkRd: (-1) trap.builder.Rd:92-99: Only 4 columns allowed in this table (row 5 has 2) checkRd: (-1) trap.builder.Rd:92-99: Only 4 columns allowed in this table (row 6 has 2)
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [50s/50s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [73s/62s] OK   Running ‘testthat.R’ [72s/61s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [84s/87s] OK
• checking PDF version of manual ... [29s/29s] OK
• checking HTML version of manual ... [22s/23s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 NOTE