* installing *source* package ‘sdmTMB’ ... ** this is package ‘sdmTMB’ version ‘0.7.2’ ** package ‘sdmTMB’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sdmTMB.cpp -o sdmTMB.o sdmTMB.cpp: In member function ‘Type objective_function<Type>::operator()() [with Type = double]’: sdmTMB.cpp:1009:64: warning: ‘s1’ may be used uninitialized [-Wmaybe-uninitialized] 1009 | if (notNA) devresid(i,m) = sdmTMB::devresid_nbinom2(y_i(i,m), s1, s1 - ln_phi(m)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sdmTMB.cpp:856:8: note: ‘s1’ was declared here 856 | Type s1, s2, s3, lognzprob, tmp_ll, ll_1, ll_2, p_mix, mix_ratio, tweedie_p, s2_large; | ^~ sdmTMB.cpp:1079:27: warning: ‘tmp_ll’ may be used uninitialized [-Wmaybe-uninitialized] 1079 | if (notNA) tmp_ll *= weights_i(i); | ~~~~~~~^~~~~~~~~~~~~~~ sdmTMB.cpp:856:31: note: ‘tmp_ll’ was declared here 856 | Type s1, s2, s3, lognzprob, tmp_ll, ll_1, ll_2, p_mix, mix_ratio, tweedie_p, s2_large; | ^~~~~~ In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228, from sdmTMB.cpp:3: /data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:345:39: warning: ‘tweedie_p’ may be used uninitialized [-Wmaybe-uninitialized] 345 | TMB_OBJECTIVE_PTR -> reportvector.push(name, #name); | ^ sdmTMB.cpp:1595:36: note: in expansion of macro ‘ADREPORT’ 1595 | if (family(0) == tweedie_family) ADREPORT(tweedie_p); // #302 | ^~~~~~~~ sdmTMB.cpp:856:69: note: ‘tweedie_p’ was declared here 856 | Type s1, s2, s3, lognzprob, tmp_ll, ll_1, ll_2, p_mix, mix_ratio, tweedie_p, s2_large; | ^~~~~~~~~ g++ -std=gnu++17 -shared -L/usr/local/lib64 -o sdmTMB.so sdmTMB.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src' installing to /data/gannet/ripley/R/packages/tests-devel/sdmTMB.Rcheck/00LOCK-sdmTMB/00new/sdmTMB/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sdmTMB)