* installing *source* package ‘sdmTMB’ ...
** this is package ‘sdmTMB’ version ‘0.7.2’
** package ‘sdmTMB’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/data/gannet/ripley/R/test-dev/RcppEigen/include' -I'/data/gannet/ripley/R/test-dev/TMB/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sdmTMB.cpp -o sdmTMB.o
sdmTMB.cpp: In member function ‘Type objective_function<Type>::operator()() [with Type = double]’:
sdmTMB.cpp:1009:64: warning: ‘s1’ may be used uninitialized [-Wmaybe-uninitialized]
 1009 |             if (notNA) devresid(i,m) = sdmTMB::devresid_nbinom2(y_i(i,m), s1, s1 - ln_phi(m));
      |                                        ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sdmTMB.cpp:856:8: note: ‘s1’ was declared here
  856 |   Type s1, s2, s3, lognzprob, tmp_ll, ll_1, ll_2, p_mix, mix_ratio, tweedie_p, s2_large;
      |        ^~
sdmTMB.cpp:1079:27: warning: ‘tmp_ll’ may be used uninitialized [-Wmaybe-uninitialized]
 1079 |         if (notNA) tmp_ll *= weights_i(i);
      |                    ~~~~~~~^~~~~~~~~~~~~~~
sdmTMB.cpp:856:31: note: ‘tmp_ll’ was declared here
  856 |   Type s1, s2, s3, lognzprob, tmp_ll, ll_1, ll_2, p_mix, mix_ratio, tweedie_p, s2_large;
      |                               ^~~~~~
In file included from /data/gannet/ripley/R/test-dev/TMB/include/TMB.hpp:228,
                 from sdmTMB.cpp:3:
/data/gannet/ripley/R/test-dev/TMB/include/tmb_core.hpp:345:39: warning: ‘tweedie_p’ may be used uninitialized [-Wmaybe-uninitialized]
  345 | TMB_OBJECTIVE_PTR -> reportvector.push(name, #name);
      |                                       ^
sdmTMB.cpp:1595:36: note: in expansion of macro ‘ADREPORT’
 1595 |   if (family(0) == tweedie_family) ADREPORT(tweedie_p); // #302
      |                                    ^~~~~~~~
sdmTMB.cpp:856:69: note: ‘tweedie_p’ was declared here
  856 |   Type s1, s2, s3, lognzprob, tmp_ll, ll_1, ll_2, p_mix, mix_ratio, tweedie_p, s2_large;
      |                                                                     ^~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o sdmTMB.so sdmTMB.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/sdmTMB/src'
installing to /data/gannet/ripley/R/packages/tests-devel/sdmTMB.Rcheck/00LOCK-sdmTMB/00new/sdmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sdmTMB)