Install log for 'scs'

* installing *source* package ‘scs’ ...
** this is package ‘scs’ version ‘3.2.7’
** package ‘scs’ successfully unpacked and MD5 sums checked
** using staged installation
> 
> 
> writeLines(getwd())
/data/gannet/ripley/R/packages/tests-devel/scs
> writeLines(dir())
DESCRIPTION
MD5
NAMESPACE
NEWS.md
R
README.md
cleanup
configure
configure.win
inst
man
src
tests
> 
> # Replace printf with scs_printf
> file <- "src/scs/src/aa.c"
> src <- readLines(file)
> src <- gsub("^(\\s*)printf\\(", "\\1scs_printf(", src)
> changed_src <- c("Changed 'aa.c'", grep("printf", src, value = TRUE))
> # writeLines(changed_src)
> writeLines(src, file)
> 
> 
> # Replace sprintf with snprintf
> file <- "src/scs/src/cones.c"
> src <- paste(readLines(file), collapse = "\n")
> m <- gregexpr("\\ssprintf\\(.*?;", src)
> smatches <- regmatches(src, m)[[1]]
> patched <- gsub("sprintf(", "snprintf(", smatches, fixed = TRUE)
> patched <- strsplit(patched, ",", fixed = "TRUE")
> for (i in seq_along(smatches)) {
+   x <- patched[[i]]
+   if (i == 1) {
+     replacement <- paste(c(x[1], " 512", tail(x, -1)), collapse = ",")
+   } else {
+     replacement <- paste(c(x[1], " 512 - strlen(tmp)", tail(x, -1)), collapse = ",")
+   }
+   src <- gsub(smatches[i], replacement, src, fixed = TRUE)
+ }
> writeLines(src, file)
> 
> 
> 
> 
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
(cp -f scs_mods/rw.c scs_mods/scs.c scs/src && \
cp -f scs_mods/private.c scs/linsys/cpu/direct && \
cp -f scs_mods/scs.mk scs && \
(cd scs && \
(make purge && \
make out/libscsdir.a CC="gcc" CFLAGS="-g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic " AR="gcc-ar" RANLIB="gcc-ranlib")) && \
touch scs.ts)
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs'
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs'
make[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs'
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK -c src/scs.c -o src/scs.o
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/util.o src/util.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/cones.o src/cones.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/exp_cone.o src/exp_cone.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/aa.o src/aa.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/rw.o src/rw.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/linalg.o src/linalg.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/ctrlc.o src/ctrlc.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/scs_version.o src/scs_version.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o src/normalize.o src/normalize.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/cpu/direct/private.o linsys/cpu/direct/private.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/SuiteSparse_config.o linsys/external/amd/SuiteSparse_config.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_1.o linsys/external/amd/amd_1.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_2.o linsys/external/amd/amd_2.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_aat.o linsys/external/amd/amd_aat.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_control.o linsys/external/amd/amd_control.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_defaults.o linsys/external/amd/amd_defaults.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_dump.o linsys/external/amd/amd_dump.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_global.o linsys/external/amd/amd_global.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_info.o linsys/external/amd/amd_info.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_order.o linsys/external/amd/amd_order.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_post_tree.o linsys/external/amd/amd_post_tree.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_postorder.o linsys/external/amd/amd_postorder.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_preprocess.o linsys/external/amd/amd_preprocess.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/amd/amd_valid.o linsys/external/amd/amd_valid.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/external/qdldl/qdldl.o linsys/external/qdldl/qdldl.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/scs_matrix.o linsys/scs_matrix.c
gcc -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -Wall -pedantic -funroll-loops -I. -Iinclude -Ilinsys -O3 -fPIC -DCTRLC=1  -DGPU_TRANSPOSE_MAT=1  -DUSE_LAPACK   -c -o linsys/csparse.o linsys/csparse.c
mkdir -p out
gcc-ar rv out/libscsdir.a src/scs.o src/util.o src/cones.o src/exp_cone.o src/aa.o src/rw.o src/linalg.o src/ctrlc.o src/scs_version.o src/normalize.o linsys/cpu/direct/private.o linsys/external/amd/SuiteSparse_config.o linsys/external/amd/amd_1.o linsys/external/amd/amd_2.o linsys/external/amd/amd_aat.o linsys/external/amd/amd_control.o linsys/external/amd/amd_defaults.o linsys/external/amd/amd_dump.o linsys/external/amd/amd_global.o linsys/external/amd/amd_info.o linsys/external/amd/amd_order.o linsys/external/amd/amd_post_tree.o linsys/external/amd/amd_postorder.o linsys/external/amd/amd_preprocess.o linsys/external/amd/amd_valid.o linsys/external/qdldl/qdldl.o linsys/scs_matrix.o linsys/csparse.o
/usr/bin/ar: creating out/libscsdir.a
a - src/scs.o
a - src/util.o
a - src/cones.o
a - src/exp_cone.o
a - src/aa.o
a - src/rw.o
a - src/linalg.o
a - src/ctrlc.o
a - src/scs_version.o
a - src/normalize.o
a - linsys/cpu/direct/private.o
a - linsys/external/amd/SuiteSparse_config.o
a - linsys/external/amd/amd_1.o
a - linsys/external/amd/amd_2.o
a - linsys/external/amd/amd_aat.o
a - linsys/external/amd/amd_control.o
a - linsys/external/amd/amd_defaults.o
a - linsys/external/amd/amd_dump.o
a - linsys/external/amd/amd_global.o
a - linsys/external/amd/amd_info.o
a - linsys/external/amd/amd_order.o
a - linsys/external/amd/amd_post_tree.o
a - linsys/external/amd/amd_postorder.o
a - linsys/external/amd/amd_preprocess.o
a - linsys/external/amd/amd_valid.o
a - linsys/external/qdldl/qdldl.o
a - linsys/scs_matrix.o
a - linsys/csparse.o
gcc-ranlib out/libscsdir.a
make[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src/scs'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -I./scs/include -I/data/gannet/ripley/R/R-devel/include -DUSE_LAPACK -DCOPYAMATRIX -DR_LANG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c scsr.c -o scsr.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o scs.so init.o scsr.o -Lscs/out -lscsdir -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/scs/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/scs/src'
installing to /data/gannet/ripley/R/packages/tests-devel/scs.Rcheck/00LOCK-scs/00new/scs/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scs)