* installing *source* package ‘rupturesRcpp’ ... ** this is package ‘rupturesRcpp’ version ‘1.0.2’ ** package ‘rupturesRcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rupturesRcpp/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c L1_cwMed.cpp -o L1_cwMed.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c L2.cpp -o L2.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c LinearL2.cpp -o LinearL2.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c SIGMA.cpp -o SIGMA.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c VAR.cpp -o VAR.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tmplBinSeg.cpp -o tmplBinSeg.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tmplPelt.cpp -o tmplPelt.o tmplBinSeg.cpp: In function ‘Segment miniOptHeapCpp(const CostBase&, int, int, int, int, int, double)’: tmplBinSeg.cpp:113:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 113 | for(int i = 0; i < allBkps.n_elem; i++){ | ~~^~~~~~~~~~~~~~~~ tmplPelt.cpp: In instantiation of ‘std::vector > PELTCppTmpl::predict(double) [with CostType = Cost_L1_cwMed]’: tmplPelt.cpp:209:53: required from here 209 | .method("predict", &PELTCppTmpl::predict) | ^~~~~~~ tmplPelt.cpp:109:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | for (int j = 0; j < admissibleBkps.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ tmplPelt.cpp: In instantiation of ‘std::vector > PELTCppTmpl::predict(double) [with CostType = Cost_L2]’: tmplPelt.cpp:253:47: required from here 253 | .method("predict", &PELTCppTmpl::predict) | ^~~~~~~ tmplPelt.cpp:109:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | for (int j = 0; j < admissibleBkps.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ tmplPelt.cpp: In instantiation of ‘std::vector > PELTCppTmpl::predict(double) [with CostType = Cost_VAR]’: tmplPelt.cpp:299:48: required from here 299 | .method("predict", &PELTCppTmpl::predict) | ^~~~~~~ tmplPelt.cpp:109:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | for (int j = 0; j < admissibleBkps.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ tmplPelt.cpp: In instantiation of ‘std::vector > PELTCppTmpl::predict(double) [with CostType = Cost_SIGMA]’: tmplPelt.cpp:344:50: required from here 344 | .method("predict", &PELTCppTmpl::predict) | ^~~~~~~ tmplPelt.cpp:109:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | for (int j = 0; j < admissibleBkps.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ tmplPelt.cpp: In instantiation of ‘std::vector > PELTCppTmpl::predict(double) [with CostType = Cost_LinearL2]’: tmplPelt.cpp:392:53: required from here 392 | .method("predict", &PELTCppTmpl::predict) | ^~~~~~~ tmplPelt.cpp:109:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 109 | for (int j = 0; j < admissibleBkps.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ tmplBinSeg.cpp: At global scope: tmplBinSeg.cpp:457:13: warning: ‘void LinearL2()’ defined but not used [-Wunused-function] 457 | static void LinearL2() { | ^~~~~~~~ tmplBinSeg.cpp:411:13: warning: ‘void SIGMA()’ defined but not used [-Wunused-function] 411 | static void SIGMA() { | ^~~~~ tmplBinSeg.cpp:364:13: warning: ‘void VAR()’ defined but not used [-Wunused-function] 364 | static void VAR() { | ^~~ tmplBinSeg.cpp:316:13: warning: ‘void L2()’ defined but not used [-Wunused-function] 316 | static void L2() { | ^~ tmplBinSeg.cpp:271:13: warning: ‘void L1_cwMedian()’ defined but not used [-Wunused-function] 271 | static void L1_cwMedian() { | ^~~~~~~~~~~ tmplPelt.cpp:354:13: warning: ‘void LinearL2()’ defined but not used [-Wunused-function] 354 | static void LinearL2() { | ^~~~~~~~ tmplPelt.cpp:309:13: warning: ‘void SIGMA()’ defined but not used [-Wunused-function] 309 | static void SIGMA() { | ^~~~~ tmplPelt.cpp:263:13: warning: ‘void VAR()’ defined but not used [-Wunused-function] 263 | static void VAR() { | ^~~ tmplPelt.cpp:218:13: warning: ‘void L2()’ defined but not used [-Wunused-function] 218 | static void L2() { | ^~ tmplPelt.cpp:174:13: warning: ‘void L1_cwMedian()’ defined but not used [-Wunused-function] 174 | static void L1_cwMedian() { | ^~~~~~~~~~~ tmplBinSeg.cpp: In function ‘Segment miniOptHeapCpp(const CostBase&, int, int, int, int, int, double)’: tmplBinSeg.cpp:132:24: warning: ‘cp’ may be used uninitialized [-Wmaybe-uninitialized] 132 | minErr}; | ^ tmplBinSeg.cpp:102:7: note: ‘cp’ was declared here 102 | int cp; | ^~ tmplBinSeg.cpp:132:24: warning: ‘minlErr’ may be used uninitialized [-Wmaybe-uninitialized] 132 | minErr}; | ^ tmplBinSeg.cpp:107:10: note: ‘minlErr’ was declared here 107 | double minlErr; | ^~~~~~~ tmplBinSeg.cpp:132:24: warning: ‘minrErr’ may be used uninitialized [-Wmaybe-uninitialized] 132 | minErr}; | ^ tmplBinSeg.cpp:108:10: note: ‘minrErr’ was declared here 108 | double minrErr; | ^~~~~~~ g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c tmplWindow.cpp -o tmplWindow.o tmplWindow.cpp:438:13: warning: ‘void LinearL2()’ defined but not used [-Wunused-function] 438 | static void LinearL2() { | ^~~~~~~~ tmplWindow.cpp:382:13: warning: ‘void SIGMA()’ defined but not used [-Wunused-function] 382 | static void SIGMA() { | ^~~~~ tmplWindow.cpp:326:13: warning: ‘void VAR()’ defined but not used [-Wunused-function] 326 | static void VAR() { | ^~~ tmplWindow.cpp:272:13: warning: ‘void L2()’ defined but not used [-Wunused-function] 272 | static void L2() { | ^~ tmplWindow.cpp:213:13: warning: ‘void L1_cwMedian()’ defined but not used [-Wunused-function] 213 | static void L1_cwMedian() { | ^~~~~~~~~~~ g++ -std=gnu++17 -shared -L/usr/local/lib64 -o rupturesRcpp.so L1_cwMed.o L2.o LinearL2.o RcppExports.o SIGMA.o VAR.o tmplBinSeg.o tmplPelt.o tmplWindow.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rupturesRcpp/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rupturesRcpp/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rupturesRcpp/src' installing to /data/gannet/ripley/R/packages/tests-devel/rupturesRcpp.Rcheck/00LOCK-rupturesRcpp/00new/rupturesRcpp/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rupturesRcpp)