* installing *source* package ‘roxigraph’ ...
** this is package ‘roxigraph’ version ‘0.1.0’
** package ‘roxigraph’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.87.0 (99624be96 2025-05-06) (Fedora 1.87.0-2.fc42)
Using rustc 1.87.0 (17067e9ac 2025-05-09) (Fedora 1.87.0-2.fc42)
Building for CRAN.
Writing `src/Makevars`.
`tools/config.R` has finished.
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/roxigraph/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entrypoint.c -o entrypoint.o
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf rust/vendor.tar.xz && \
mkdir -p /data/gannet/ripley/R/packages/tests-devel/roxigraph/src/.cargo && \
cp rust/vendor-config.toml /data/gannet/ripley/R/packages/tests-devel/roxigraph/src/.cargo/config.toml; \
fi
export CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/roxigraph/src/.cargo && \
export PATH="/data/gannet/ripley/bin:/usr/local/bin:/usr/local/texbin:/usr/sbin:.:/data/gannet/ripley/bin:/usr/local/texbin:/usr/local/bin:/usr/sbin:/usr/lib64/qt-3.3/bin:/usr/share/Modules/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lib64/openmpi/bin:/usr/lib64/openmpi/bin:/data/gannet/ripley/.cargo/bin" && \
RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling libc v0.2.180
Compiling proc-macro2 v1.0.105
Compiling quote v1.0.43
Compiling unicode-ident v1.0.22
Compiling cfg-if v1.0.4
Compiling getrandom v0.3.4
Compiling zerocopy v0.8.33
Compiling thiserror v2.0.17
Compiling version_check v0.9.5
Compiling typenum v1.19.0
Compiling memchr v2.7.6
Compiling generic-array v0.14.7
Compiling oxiri v0.2.11
Compiling oxilangtag v0.1.5
Compiling syn v2.0.114
Compiling glob v0.3.3
Compiling rand_core v0.9.5
Compiling prettyplease v0.2.37
Compiling clang-sys v1.8.1
Compiling minimal-lexical v0.2.1
Compiling regex-syntax v0.8.8
Compiling ppv-lite86 v0.2.21
Compiling libloading v0.8.9
Compiling nom v7.1.3
Compiling crypto-common v0.1.7
Compiling block-buffer v0.10.4
Compiling rand_chacha v0.9.0
Compiling shlex v1.3.0
Compiling peg-runtime v0.8.5
Compiling bindgen v0.72.1
Compiling rand v0.9.2
Compiling either v1.15.0
Compiling itertools v0.13.0
Compiling regex-automata v0.4.13
Compiling cexpr v0.6.0
Compiling peg-macros v0.8.5
Compiling digest v0.10.7
Compiling jobserver v0.1.34
Compiling regex v1.12.2
Compiling quick-xml v0.37.5
Compiling find-msvc-tools v0.1.7
Compiling json-event-parser v0.2.2
Compiling bitflags v2.10.0
Compiling log v0.4.29
Compiling rustc-hash v2.1.1
Compiling cc v1.2.52
Compiling peg v0.8.5
Compiling thiserror-impl v2.0.17
Compiling aho-corasick v1.1.4
Compiling cpufeatures v0.2.17
Compiling crossbeam-utils v0.8.21
Compiling extendr-ffi v0.8.1
Compiling parking_lot_core v0.9.12
Compiling smallvec v1.15.1
Compiling oxsdatatypes v0.2.2
Compiling paste v1.0.15
Compiling scopeguard v1.2.0
Compiling once_cell v1.21.3
Compiling lock_api v0.4.14
Compiling oxrdf v0.3.1
Compiling spargebra v0.4.3
Compiling oxjsonld v0.2.1
Compiling oxrdfxml v0.2.1
Compiling sparesults v0.3.1
Compiling oxttl v0.2.1
Compiling sparopt v0.3.3
Compiling sha2 v0.10.9
Compiling sha1 v0.10.6
Compiling md-5 v0.10.6
Compiling hashbrown v0.14.5
Compiling oxrocksdb-sys v0.5.3
Compiling hex v0.4.3
Compiling extendr-api v0.8.1
Compiling dashmap v6.1.0
Compiling spareval v0.2.3
Compiling oxrdfio v0.2.1
Compiling extendr-macros v0.8.1
Compiling siphasher v1.0.1
Compiling oxigraph v0.5.3
Compiling roxigraph v0.1.0 (/data/gannet/ripley/R/packages/tests-devel/roxigraph/src/rust)
note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms.
note: native-static-libs: -lstdc++ -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc
Finished `release` profile [optimized] target(s) in 20m 19s
# Always clean up CARGOTMP
rm -Rf /data/gannet/ripley/R/packages/tests-devel/roxigraph/src/.cargo;
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o roxigraph.so entrypoint.o -L./rust/target/release -lroxigraph
rm -Rf /data/gannet/ripley/R/packages/tests-devel/roxigraph/src/.cargo /data/gannet/ripley/R/packages/tests-devel/roxigraph/src/vendor ./rust/target
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/roxigraph/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/roxigraph/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/roxigraph/src'
installing to /data/gannet/ripley/R/packages/tests-devel/roxigraph.Rcheck/00LOCK-roxigraph/00new/roxigraph/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (roxigraph)