* installing *source* package ‘rlemon’ ...
** package ‘rlemon’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rlemon/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RInterfaces.cpp -o RInterfaces.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c base.cpp -o base.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c random.cpp -o random.o
In file included from /usr/local/gcc13/include/c++/13.2.0/x86_64-pc-linux-gnu/bits/c++allocator.h:33,
from /usr/local/gcc13/include/c++/13.2.0/bits/allocator.h:46,
from /usr/local/gcc13/include/c++/13.2.0/bits/alloc_traits.h:39,
from /usr/local/gcc13/include/c++/13.2.0/ext/alloc_traits.h:34,
from /usr/local/gcc13/include/c++/13.2.0/bits/hashtable_policy.h:39,
from /usr/local/gcc13/include/c++/13.2.0/bits/hashtable.h:35,
from /usr/local/gcc13/include/c++/13.2.0/bits/unordered_map.h:33,
from /usr/local/gcc13/include/c++/13.2.0/unordered_map:41,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/platform/compiler.h:153,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/r/headers.h:62,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:30,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from approximation.h:1,
from RInterfaces.cpp:1:
In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Args = {lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT}; _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Args = {lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT}; _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT]' at /usr/local/gcc13/include/c++/13.2.0/bits/alloc_traits.h:537:17,
inlined from 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT}; _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Alloc = std::allocator<lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT>]' at /usr/local/gcc13/include/c++/13.2.0/bits/vector.tcc:117:30,
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Alloc = std::allocator<lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT>]' at /usr/local/gcc13/include/c++/13.2.0/bits/stl_vector.h:1296:21,
inlined from 'lemon::SmartEdgeSetBase<GR>::Edge lemon::SmartEdgeSetBase<GR>::addEdge(const Node&, const Node&) [with GR = lemon::ListGraph]' at ../inst/lemon/edge_set.h:1144:21,
inlined from 'lemon::EdgeSetExtender<Base>::Edge lemon::EdgeSetExtender<Base>::addEdge(const Node&, const Node&) [with Base = lemon::SmartEdgeSetBase<lemon::ListGraph>]' at ../inst/lemon/bits/edge_set_extender.h:588:34:
/usr/local/gcc13/include/c++/13.2.0/bits/new_allocator.h:187:11: warning: '<anonymous>' may be used uninitialized [-Wmaybe-uninitialized]
187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../inst/lemon/planarity.h:36,
from planarity_embedding.h:1,
from RInterfaces.cpp:11:
../inst/lemon/edge_set.h: In member function 'lemon::EdgeSetExtender<Base>::Edge lemon::EdgeSetExtender<Base>::addEdge(const Node&, const Node&) [with Base = lemon::SmartEdgeSetBase<lemon::ListGraph>]':
../inst/lemon/edge_set.h:1144:22: note: '<anonymous>' declared here
1144 | arcs.push_back(ArcT());
| ^~~~~~
In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Args = {lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT}; _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Args = {lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT}; _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT]' at /usr/local/gcc13/include/c++/13.2.0/bits/alloc_traits.h:537:17,
inlined from 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT}; _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Alloc = std::allocator<lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT>]' at /usr/local/gcc13/include/c++/13.2.0/bits/vector.tcc:117:30,
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT; _Alloc = std::allocator<lemon::SmartEdgeSetBase<lemon::ListGraph>::ArcT>]' at /usr/local/gcc13/include/c++/13.2.0/bits/stl_vector.h:1296:21,
inlined from 'lemon::SmartEdgeSetBase<GR>::Edge lemon::SmartEdgeSetBase<GR>::addEdge(const Node&, const Node&) [with GR = lemon::ListGraph]' at ../inst/lemon/edge_set.h:1145:21,
inlined from 'lemon::EdgeSetExtender<Base>::Edge lemon::EdgeSetExtender<Base>::addEdge(const Node&, const Node&) [with Base = lemon::SmartEdgeSetBase<lemon::ListGraph>]' at ../inst/lemon/bits/edge_set_extender.h:588:34:
/usr/local/gcc13/include/c++/13.2.0/bits/new_allocator.h:187:11: warning: '<anonymous>' may be used uninitialized [-Wmaybe-uninitialized]
187 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../inst/lemon/edge_set.h: In member function 'lemon::EdgeSetExtender<Base>::Edge lemon::EdgeSetExtender<Base>::addEdge(const Node&, const Node&) [with Base = lemon::SmartEdgeSetBase<lemon::ListGraph>]':
../inst/lemon/edge_set.h:1145:22: note: '<anonymous>' declared here
1145 | arcs.push_back(ArcT());
| ^~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o rlemon.so RInterfaces.o RcppExports.o base.o random.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rlemon/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rlemon/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rlemon/src'
installing to /data/gannet/ripley/R/packages/tests-devel/rlemon.Rcheck/00LOCK-rlemon/00new/rlemon/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rlemon)