* installing *source* package ‘ridgeBART’ ...
** this is package ‘ridgeBART’ version ‘1.0.2’
** package ‘ridgeBART’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ridgeBART/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c data_parsing_funs.cpp -o data_parsing_funs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c draw_tree.cpp -o draw_tree.o
In file included from data_parsing_funs.h:4,
                 from data_parsing_funs.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from draw_tree.h:4,
                 from draw_tree.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c eval_bases.cpp -o eval_bases.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c get_bases.cpp -o get_bases.o
In file included from eval_bases.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from update_tree.h:4,
                 from get_bases.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c graph_funs.cpp -o graph_funs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c polytope_funs.cpp -o polytope_funs.o
In file included from graph_funs.h:6,
                 from graph_funs.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
graph_funs.cpp: In function ‘void hotspot(std::set<int>&, std::set<int>&, std::vector<edge>&, std::set<int>&, RNG&, bool)’:
graph_funs.cpp:545:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  545 |     for(int ix = 0; ix < l_index.size(); ++ix){
      |                     ~~~^~~~~~~~~~~~~~~~
graph_funs.cpp: In function ‘void delete_unif_edge(std::set<int>&, std::set<int>&, std::vector<edge>&, std::set<int>&, RNG&)’:
graph_funs.cpp:566:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<edge>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  566 |   for(int e = 0; e < edges.size(); e++){
      |                  ~~^~~~~~~~~~~~~~
graph_funs.cpp: In function ‘void signcheck_split(std::set<int>&, std::set<int>&, std::vector<edge>&, std::set<int>&)’:
graph_funs.cpp:618:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  618 |     for(int ix = 0; ix < lval_index.size(); ++ix){
      |                     ~~~^~~~~~~~~~~~~~~~~~~
graph_funs.cpp: In function ‘void graph_partition(std::set<int>&, std::set<int>&, std::vector<edge>&, std::set<int>&, int&, RNG&)’:
graph_funs.cpp:658:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int, std::allocator<int> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  658 |       for(int comp_ix = 0; comp_ix < components.size(); comp_ix++){
      |                            ~~~~~~~~^~~~~~~~~~~~~~~~~~~
graph_funs.cpp: In function ‘void update_theta_u(std::vector<double>&, double&, std::vector<int, std::allocator<int> >&, int&, double&, double&, RNG&)’:
graph_funs.cpp:703:19: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  703 |   if(theta.size() != p){
      |      ~~~~~~~~~~~~~^~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c predict_ridgeBART.cpp -o predict_ridgeBART.o
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from polytope_funs.h:11,
                 from polytope_funs.cpp:8:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
polytope_funs.cpp: In function ‘void lin_ess(std::vector<double>&, std::vector<std::map<int, double> >&, std::vector<double>&, std::vector<double>&, int&, RNG&)’:
polytope_funs.cpp:152:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  152 |   while(len_to_go > 0 && c_xi < active_intervals.size()){
      |                          ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
polytope_funs.cpp: In function ‘void calc_gradient(std::vector<std::map<int, double> >&, std::vector<double>&, std::vector<double>&, int&, std::vector<double>&, arma::vec&)’:
polytope_funs.cpp:180:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  180 |     for(int i = 0; i < phi_vec.size(); ++i){
      |                    ~~^~~~~~~~~~~~~~~~
polytope_funs.cpp: In function ‘void calc_hessian(std::vector<std::map<int, double> >&, std::vector<double>&, std::vector<double>&, int&, std::vector<double>&, arma::mat&)’:
polytope_funs.cpp:221:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  221 |       for(int i = 0; i < phi_vec.size(); ++i){
      |                      ~~^~~~~~~~~~~~~~~~
polytope_funs.cpp: In function ‘void inf_analytic_center(arma::vec&, arma::mat&, arma::vec&)’:
polytope_funs.cpp:535:18: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  535 |     if (A.n_rows != n) Rcpp::Rcout << "A has " << A.n_rows << " rows but b has " << n << " elements!" << std::endl;
      |         ~~~~~~~~~^~~~
polytope_funs.cpp:536:18: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  536 |     if (A.n_cols != d) Rcpp::Rcout << "A has " << A.n_cols << " cols but x has " << d << " elements!" << std::endl;
      |         ~~~~~~~~~^~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from update_tree.h:4,
                 from predict_ridgeBART.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
polytope_funs.cpp: In function ‘void lin_ess(std::vector<double>&, std::vector<std::map<int, double> >&, std::vector<double>&, std::vector<double>&, int&, RNG&)’:
polytope_funs.cpp:147:10: warning: ‘rand_theta’ may be used uninitialized [-Wmaybe-uninitialized]
  147 |   double rand_theta;
      |          ^~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c probit_ridgeBART_fit.cpp -o probit_ridgeBART_fit.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rand_basis_funs.cpp -o rand_basis_funs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ridgeBART_fit.cpp -o ridgeBART_fit.o
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from update_tree.h:4,
                 from probit_ridgeBART_fit.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp: In function ‘Rcpp::List probit_ridgeBART_fit(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::NumericMatrix, Rcpp::LogicalVector, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::LogicalVector, int, bool, double, int, bool, double, double, double, Rcpp::NumericVector, double, double, double, int, int, int, int, int, Rcpp::NumericVector, double, double, double, int, int, int, int, bool, bool, bool, int)’:
probit_ridgeBART_fit.cpp:229:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  229 |         for (int i = 0; i < tmp_mu.size(); ++i){
      |                         ~~^~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp:333:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  333 |           for (int i = 0; i < tmp_mu.size(); ++i){
      |                           ~~^~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from polytope_funs.h:11,
                 from rand_basis_funs.h:4,
                 from rand_basis_funs.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp:356:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  356 |           for (int i = 0; i < tmp_mu.size(); ++i){
      |                           ~~^~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp:366:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<arma::Col<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  366 |     for (int i = 0; i < rho_diag.accepted.size(); i++) add_rho(sampled_rhos, rho_diag.accepted[i], leaf_count, di_train);
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp:367:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<arma::Col<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  367 |     for (int i = 0; i < rho_diag.pruned.size(); i++) remove_rho(sampled_rhos, rho_diag.pruned[i], leaf_count, di_train);
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp:425:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  425 |               for (int i = 0; i < tmp_mu.size(); ++i) allfit_test[ss_it->second[i]] += tmp_mu(i);
      |                               ~~^~~~~~~~~~~~~~~
probit_ridgeBART_fit.cpp:449:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<double, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  449 |     for (int i = 0; i < sampled_rhos.size(); ++i){
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
rand_basis_funs.cpp: In function ‘void fit_ensemble(std::vector<double>&, std::vector<tree>&, data_info&)’:
rand_basis_funs.cpp:122:17: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  122 |   if(fit.size() != di.n) Rcpp::stop("[fit_ensemble]: size of fit must be equal to di.n!"); // honestly should never get triggered
      |      ~~~~~~~~~~~^~~~~~~
rand_basis_funs.cpp:133:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<tree>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  133 |     for(int m = 0; m < t_vec.size(); m++) {
      |                    ~~^~~~~~~~~~~~~~
rand_basis_funs.cpp: In function ‘void remove_rho(std::vector<std::map<double, int> >&, arma::vec&, int&, data_info&)’:
rand_basis_funs.cpp:192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<double, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  192 |       for (int i = 0; i < sampled_rhos.size(); ++i){
      |                       ~~^~~~~~~~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from update_tree.h:4,
                 from ridgeBART_fit.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
ridgeBART_fit.cpp: In function ‘Rcpp::List ridgeBART_fit(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::NumericMatrix, Rcpp::LogicalVector, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::LogicalVector, int, bool, double, int, bool, double, double, double, Rcpp::NumericVector, double, double, double, double, double, double, int, int, int, int, int, Rcpp::NumericVector, double, double, double, int, int, int, int, bool, bool, bool, int)’:
ridgeBART_fit.cpp:235:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  235 |         for (int i = 0; i < tmp_mu.size(); ++i){
      |                         ~~^~~~~~~~~~~~~~~
ridgeBART_fit.cpp:318:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  318 |           for (int i = 0; i < tmp_mu.size(); ++i){
      |                           ~~^~~~~~~~~~~~~~~
ridgeBART_fit.cpp:341:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  341 |           for (int i = 0; i < tmp_mu.size(); ++i){
      |                           ~~^~~~~~~~~~~~~~~
ridgeBART_fit.cpp:356:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<arma::Col<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  356 |     for (int i = 0; i < rho_diag.accepted.size(); i++) add_rho(sampled_rhos, rho_diag.accepted[i], leaf_count, di_train);
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
ridgeBART_fit.cpp:357:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<arma::Col<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  357 |     for (int i = 0; i < rho_diag.pruned.size(); i++) remove_rho(sampled_rhos, rho_diag.pruned[i], leaf_count, di_train);
      |                     ~~^~~~~~~~~~~~~~~~~~~~~~~~
ridgeBART_fit.cpp:419:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  419 |               for (int i = 0; i < tmp_mu.size(); ++i) allfit_test[ss_it->second[i]] += tmp_mu(i);
      |                               ~~^~~~~~~~~~~~~~~
ridgeBART_fit.cpp:443:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<double, int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  443 |     for (int i = 0; i < sampled_rhos.size(); ++i){
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
rand_basis_funs.cpp: In function ‘arma::vec draw_rho(std::vector<std::map<double, int> >&, int&, data_info&, tree_prior_info&, RNG&)’:
rand_basis_funs.cpp:237:16: warning: ‘output’ may be used uninitialized [-Wmaybe-uninitialized]
  237 |         rho[i] = output;
rand_basis_funs.cpp:211:12: note: ‘output’ was declared here
  211 |     double output;
      |            ^~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rng.cpp -o rng.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rridgeBART.cpp -o rridgeBART.o
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from draw_tree.h:4,
                 from rridgeBART.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from rng.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
rng.cpp: In member function ‘arma::vec RNG::mvnormal(arma::vec, arma::mat)’:
rng.cpp:171:17: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  171 |   if( (P.n_rows != d) | (P.n_cols != d)){
      |        ~~~~~~~~~^~~~
rng.cpp:171:35: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
  171 |   if( (P.n_rows != d) | (P.n_cols != d)){
      |                          ~~~~~~~~~^~~~
rridgeBART.cpp: In function ‘Rcpp::List drawTree(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::NumericMatrix, Rcpp::LogicalVector, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::LogicalVector, int, bool, double, int, bool, double, double, Rcpp::NumericVector, double, double, double, int, int, int, int, Rcpp::NumericVector, double, double, double, int, bool, int)’:
rridgeBART.cpp:142:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  142 |     for (int i = 0; i < tmp_mu.size(); ++i){
      |                     ~~^~~~~~~~~~~~~~~
rridgeBART.cpp: In function ‘Rcpp::List drawEnsemble(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, Rcpp::NumericMatrix, Rcpp::LogicalVector, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::Nullable<Rcpp::Vector<19> >, Rcpp::LogicalVector, int, bool, double, int, bool, double, double, Rcpp::NumericVector, double, double, double, int, int, int, int, Rcpp::NumericVector, double, double, double, int, bool, int)’:
rridgeBART.cpp:353:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  353 |       for (int i = 0; i < tmp_mu.size(); ++i){
      |                       ~~^~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rule_funs.cpp -o rule_funs.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c save_trees.cpp -o save_trees.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c tree.cpp -o tree.o
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from rule_funs.cpp:2:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from polytope_funs.h:11,
                 from rand_basis_funs.h:4,
                 from save_trees.h:4,
                 from save_trees.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
save_trees.cpp: In function ‘Rcpp::List parse_fit_logs(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::map<int, double> >&, std::vector<arma::Mat<double> >&, std::vector<arma::Col<double> >&, std::vector<std::map<int, arma::Col<double> > >&, tree_prior_info&, data_info&)’:
save_trees.cpp:158:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |     for (int i = 0; i < change_log.size(); ++i) change_list[i] = change_log[i];
      |                     ~~^~~~~~~~~~~~~~~~~~~
save_trees.cpp:161:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  161 |     for (int i = 0; i < phi_log.size(); ++i){
      |                     ~~^~~~~~~~~~~~~~~~
save_trees.cpp:173:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<arma::Mat<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  173 |     for (int i = 0; i < w_log.size(); ++i) w_list[i] = w_log[i];
      |                     ~~^~~~~~~~~~~~~~
save_trees.cpp:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<arma::Col<double> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  176 |     for (int i = 0; i < b_log.size(); ++i) b_list[i] = b_log[i];
      |                     ~~^~~~~~~~~~~~~~
save_trees.cpp:179:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::map<int, arma::Col<double> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  179 |     for (int i = 0; i < beta_log.size(); ++i){
      |                     ~~^~~~~~~~~~~~~~~~~
save_trees.cpp: In function ‘void read_fit_logs(tree&, int&, int&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::map<int, double> >&, std::vector<arma::Mat<double> >&, std::vector<arma::Col<double> >&, std::vector<std::map<int, arma::Col<double> > >&, int&, int&, set_str_conversion&)’:
save_trees.cpp:254:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  254 |     if (last_log_index == change_log.size()){
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from tree.cpp:4:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c update_tree.cpp -o update_tree.o
In file included from data_parsing_funs.h:4,
                 from rng.h:3,
                 from tree.h:5,
                 from rule_funs.h:4,
                 from update_tree.h:4,
                 from update_tree.cpp:1:
structs.h: In member function ‘std::set<int> set_str_conversion::hex_to_set(int&, std::string&)’:
structs.h:399:23: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  399 |     if(hex_str.size() != num_blocks+1){
      |        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
update_tree.cpp: In function ‘void change_tree(tree&, suff_stat&, rho_diag_t&, std::vector<std::map<double, int> >&, int&, int&, double&, data_info&, tree_prior_info&, RNG&)’:
update_tree.cpp:560:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  560 |   for (int i = 0; i < bn_nid_vec.size(); i++){
      |                   ~~^~~~~~~~~~~~~~~~~~~
update_tree.cpp:569:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  569 |   for (int i = 0; i < bn_nid_vec.size(); i++){
      |                   ~~^~~~~~~~~~~~~~~~~~~
update_tree.cpp:594:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  594 |       for (int i = 0; i < bn_nid_vec.size(); i++){
      |                       ~~^~~~~~~~~~~~~~~~~~~
update_tree.cpp:604:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  604 |     for (int i = 0; i < bn_nid_vec.size(); i++) t.get_ptr(bn_nid_vec[i])->set_leaf(leaf_vec[i]);
      |                     ~~^~~~~~~~~~~~~~~~~~~
update_tree.cpp: In function ‘void compute_suff_stat_grow(suff_stat&, suff_stat&, int&, rule_t&, tree&, data_info&)’:
update_tree.cpp:67:131: warning: ‘xx_cont’ may be used uninitialized [-Wmaybe-uninitialized]
   67 |         for(rc_it phi_it = rule.phi.begin(); phi_it != rule.phi.end(); ++phi_it) tmp_x += (phi_it->second) * xx_cont[phi_it->first];
      |                                                                                                                                   ^
update_tree.cpp:5:11: note: ‘xx_cont’ was declared here
    5 |   double* xx_cont;
      |           ^~~~~~~
update_tree.cpp:48:54: warning: ‘xx_cat’ may be used uninitialized [-Wmaybe-uninitialized]
   48 |         l_count = rule.l_vals.count(xx_cat[rule.v_cat]);
      |                                                      ^
update_tree.cpp:6:8: note: ‘xx_cat’ was declared here
    6 |   int* xx_cat;
      |        ^~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o ridgeBART.so RcppExports.o data_parsing_funs.o draw_tree.o eval_bases.o get_bases.o graph_funs.o polytope_funs.o predict_ridgeBART.o probit_ridgeBART_fit.o rand_basis_funs.o ridgeBART_fit.o rng.o rridgeBART.o rule_funs.o save_trees.o tree.o update_tree.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ridgeBART/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ridgeBART/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ridgeBART/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ridgeBART.Rcheck/00LOCK-ridgeBART/00new/ridgeBART/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ridgeBART)